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BioLiP
>protein
SHMEAVQNRIVEAAERVPGVRGVIHLRARYVGQDIWADMIIGVDPENTVEQAEEICEAVQAAVCGKIRRIESLHVSAEAR
EIGDTTKPSF

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6h5k:A 91 90 0.9667 0.9560 0.9667 7.18e-58 6g55:A, 6h5m:A, 6h5u:B, 6h5u:A, 6h5u:C, 6h87:A, 5hsp:A
2 5ho1:A 86 75 0.2333 0.2442 0.2800 1.91e-04 5ho1:B
3 6lrt:A 423 68 0.2000 0.0426 0.2647 2.4 6lrt:D, 6lrt:G, 6lrt:J, 6lrt:M, 6lrt:P, 6lrt:S, 6lrt:V
4 3wd7:A 401 48 0.1667 0.0374 0.3125 4.0 7cct:A, 6l7j:A, 3wd7:B
5 7caf:E 443 27 0.1556 0.0316 0.5185 4.1 8hpl:E, 8hpm:E, 8hpn:E, 8hpr:E
6 6hy3:A 269 43 0.1333 0.0446 0.2791 5.8
7 8gym:a9 340 23 0.1222 0.0324 0.4783 8.0 8b6f:A1, 8bqs:A1, 8gym:A9, 8gzu:a9, 8gzu:A9, 7tgh:A9
8 2phn:B 249 28 0.1222 0.0442 0.3929 8.7 8g8p:AAA, 2phn:A, 7uld:A, 7ule:A, 7ulf:A
9 5w7c:C 420 30 0.1333 0.0286 0.4000 8.8 5w78:B, 5w7c:D
10 3akc:A 208 42 0.1778 0.0769 0.3810 9.5 3akd:A, 7ckj:A, 3w8n:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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