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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SHMAHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTA
YLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPK
QDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNL
IKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAA
EGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEK
LSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAY
TDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTAQVPAKTDCVGFFGPVVPDGYGICYNPMEAHIN
FSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK

The query sequence (length=599) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2h3p:A 599 599 0.9967 0.9967 0.9967 0.0 2h3p:B, 2h3u:A, 2h3u:B, 2h3w:A, 2h3w:B, 1ndf:A, 1ndf:B, 1ndi:A, 1ndi:B, 1s5o:A, 1t7o:A, 1t7q:A, 1t7q:B
2 2fy3:A 595 598 0.4424 0.4454 0.4431 0.0 7amd:A, 2fy4:A, 2fy5:A
3 1xl8:B 600 611 0.3422 0.3417 0.3355 2.30e-99 1xl8:A
4 4eyw:B 634 638 0.3339 0.3155 0.3135 1.88e-87 2deb:A, 2deb:B, 4ep9:A, 4eph:A, 4eyw:A, 2fw3:A, 2rcu:A, 2rcu:B
5 3o75:A 270 73 0.0417 0.0926 0.3425 3.1 3o75:B
6 2b1o:A 212 39 0.0200 0.0566 0.3077 4.6
7 6yxx:A2 463 62 0.0267 0.0346 0.2581 5.8 7aoi:A2, 6hiv:A2, 6hix:A2, 6yxy:A2
8 7d63:AE 1534 41 0.0250 0.0098 0.3659 9.1 7d5s:AE, 6ke6:AE, 6lqp:AE, 6lqq:AE, 6lqr:AE, 6lqs:AE, 6lqt:AE, 6lqu:AE, 6lqv:AE, 7suk:LM, 5wlc:LM
9 7ajt:UJ 1116 41 0.0250 0.0134 0.3659 9.8 7aju:UJ, 6zqc:UJ, 6zqd:UJ

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218