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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SHLSARNIATEALQMKKLHQERGGNPMLAQQARRVLFATSIAGQNLDARSVALLLNTAVYFGMESDAKLVRECIDYCLKN
DKLITVDVLPIVVTACATLKSRDAREVIEMQAQKAARNAKFLDAKDVTNIISAFSKTGINHEKLFAFLSRRVQTLARVGE
FEAAHLVILANAFSRLRYRDKFLFGAIARRAMSLRERVTVNELVPLIVAFSKIGLKDPKLSKRFATKAMEYVDQMNAEQV
ASMFMAFAYFGIRYDQLFGVLTNRAVELIDEFNAQYISTTLNAFQRIGINNPELFDNLAERALAVVQDHDARDISKTVTA
LAHFGLKDEELFKRLASHAASIADQFDAMGLVNTAHAFARTNFLQQDMAVALSERSVYVCRLLDAGETRRLLWALAKFQV
RDPKILTPVFNRCLALHYDFFADPTGSEEIEEIFDFYGPNFCPPLYQLYISRG

The query sequence (length=453) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fni:6 453 453 1.0000 1.0000 1.0000 0.0 8fn6:6, 8fnc:6, 8fnf:6, 8fnk:6
2 8fnc:8 516 267 0.1015 0.0891 0.1723 0.001 8fnf:8, 8fni:8, 8fnk:8
3 8fnc:8 516 321 0.1258 0.1105 0.1776 0.008 8fnf:8, 8fni:8, 8fnk:8
4 8fnc:8 516 280 0.1258 0.1105 0.2036 0.020 8fnf:8, 8fni:8, 8fnk:8
5 8a22:Xd 413 141 0.0861 0.0944 0.2766 0.008 8apn:Xd, 8apo:Xd
6 8a22:Xd 413 177 0.0861 0.0944 0.2203 0.017 8apn:Xd, 8apo:Xd
7 1zgl:M 178 59 0.0331 0.0843 0.2542 2.7
8 1bf6:A 291 91 0.0640 0.0997 0.3187 3.3 1bf6:B, 4lef:C, 4lef:D, 4lef:A, 4lef:B, 4lef:E, 4lef:F, 4lef:G, 4lef:H
9 4cyj:B 412 50 0.0331 0.0364 0.3000 4.2 4cyi:A, 4cyi:B, 4cyi:C, 4cyi:D, 4cyi:E, 4cyi:F, 4cyi:G, 4cyi:H, 4cyj:A, 4cyj:C, 4cyj:D
10 7ezt:B 727 92 0.0530 0.0330 0.2609 4.4
11 5v7y:A 207 80 0.0464 0.1014 0.2625 4.9 5hv0:A, 5hv0:B, 5hv4:A, 5iav:A, 5iav:B, 5iax:A, 5iax:B, 5v7y:B, 5v7y:D, 5v7y:C
12 4oes:A 498 46 0.0353 0.0321 0.3478 8.5
13 1z7e:D 644 81 0.0397 0.0280 0.2222 9.4 2bln:A, 2bln:B, 5j63:A, 5j63:B, 5j63:C, 5j63:D, 1z7e:A, 1z7e:B, 1z7e:C, 1z7e:E, 1z7e:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218