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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SHHHHHHSMGNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTEEE

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2lev:A 57 57 1.0000 1.0000 1.0000 4.81e-38
2 8odq:A 150 48 0.2807 0.1067 0.3333 0.92 8odq:C
3 4iu2:A 209 16 0.1404 0.0383 0.5000 0.99 8ajy:A, 8ajy:C, 4iu3:A
4 4b2x:B 302 15 0.1579 0.0298 0.6000 1.0 4arw:A, 4arw:B, 4arw:C, 4arw:D, 4asj:A, 4asj:B, 4asj:C, 4asj:D, 4asy:A, 4asy:B, 4asy:C, 4asy:D, 4b2w:A, 4b2w:B, 4b2w:C, 4b2w:D, 4b2x:A, 4b2x:C, 4b2x:D, 4b3u:A, 4b3u:B, 4b3u:C, 4b3u:D, 4b42:A, 4b42:B, 4b42:C, 4b42:D, 4b4b:A, 4b4b:B, 4b4b:C, 4b4b:D, 4b4g:A, 4b4g:B, 4b4g:C, 4b4g:D, 4b4m:A, 4b4m:B, 4b4m:C, 4b4m:D, 4b5b:A, 4b5b:B, 4b5b:C, 4b5b:D, 5fts:A, 5fts:B, 5fts:C, 5fts:D, 5ftv:A, 5ftv:B, 5ftv:C, 5ftv:D, 5fu0:A, 5fu0:B, 5fu0:C, 5fu0:D, 5fu8:A, 5fu8:B, 5fu8:C, 5fu8:D, 5fuh:A, 5fuh:B, 5fuh:C, 5fuh:D, 1fxo:A, 1fxo:C, 1fxo:B, 1fxo:D, 1fxo:E, 1fxo:H, 1fxo:F, 1fxo:G, 5fye:A, 5fye:B, 5fye:C, 5fye:D, 1g0r:A, 1g0r:B, 1g0r:C, 1g0r:D, 1g0r:E, 1g0r:G, 1g0r:H, 1g1l:A, 1g1l:C, 1g1l:B, 1g1l:D, 1g1l:E, 1g1l:H, 1g1l:F, 1g1l:G, 1g23:A, 1g23:B, 1g23:C, 1g23:D, 1g23:E, 1g23:F, 1g23:G, 1g23:H, 1g2v:A, 1g2v:C, 1g2v:B, 1g2v:D, 1g2v:E, 1g2v:G, 1g2v:F, 1g2v:H, 1g3l:A, 1g3l:C, 1g3l:B, 1g3l:D, 6t37:A, 6t37:B, 6t37:C, 6t37:D, 6t38:A, 6t38:B, 6t38:C, 6t38:D, 6tqg:A, 6tqg:B, 6tqg:C, 6tqg:D, 3zlk:A, 3zlk:B, 3zlk:C, 3zlk:D, 3zll:A, 3zll:B, 3zll:C, 3zll:D
5 7c3b:B 306 43 0.2456 0.0458 0.3256 2.4
6 1yfr:A 448 48 0.2632 0.0335 0.3125 3.1 1yfr:B, 1yfs:A, 1yfs:B, 1ygb:A
7 4gdf:A 497 44 0.2807 0.0322 0.3636 3.3 5d9i:A, 5d9i:B, 4e2i:A, 4e2i:B, 4e2i:C, 4e2i:D, 4e2i:E, 4e2i:F, 4e2i:G, 4e2i:H, 4e2i:I, 4e2i:J, 4e2i:K, 4e2i:L, 4fgn:A, 4fgn:B, 4gdf:B, 4gdf:E, 4gdf:F, 2h1l:A, 2h1l:B, 2h1l:C, 2h1l:D, 2h1l:E, 2h1l:F, 2h1l:G, 2h1l:H, 2h1l:I, 2h1l:J, 2h1l:K, 2h1l:L, 2itl:A, 2itl:B, 1n25:A, 1n25:B, 2nl8:A, 2ntc:A, 2ntc:B, 1svl:A, 1svl:B, 1svl:C, 1svm:A, 1svm:F, 1svm:B, 1svm:C, 1svm:D, 1svm:E, 1svo:A, 1svo:B
8 4qqx:G 887 28 0.1754 0.0113 0.3571 4.2
9 4qqw:A 911 28 0.1754 0.0110 0.3571 4.3 4qqw:C, 4qqw:E, 4qqw:G, 4qqx:A, 4qqx:C, 4qqx:E, 4qqy:A, 4qqy:C, 4qqy:E, 4qqy:G, 4qqz:A, 4qqz:C, 4qqz:E, 4qqz:G
10 6c66:G 832 28 0.1754 0.0120 0.3571 4.3
11 6ncr:A 342 40 0.2281 0.0380 0.3250 5.0 6ncr:B
12 7kn8:B 708 28 0.1579 0.0127 0.3214 5.9 7kn8:A
13 5idy:B 264 13 0.1228 0.0265 0.5385 8.4 5idy:A, 5vps:A
14 2ebs:B 771 36 0.1754 0.0130 0.2778 8.5 2ebs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218