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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SHGQSCLGCVVLVSVIEQLAEVHNSSVQVAMERLCSYLPEKLFLKTACYFLVQTFGSDIIKLLDEAMKADVVCYALEFCK
RGAVQPQCHLYPLPQEAWESALEKARQVLRRSCSLPFLTKICQKIELSIKKAVPFKDVDSDKHSVFPTLRGYHWRGRDCN
DSDKTVYPGRRPDNWDIHQDSNCNGIWGIDPKDGIPYEKKFCEGSQPRGIILLGDAAGAHFHIPPEWLTASQMSVNSFLN
LPSALTDELNWPQLSGVTGFLDSTSGIEEKSIYHRLRKRNHCNHRDYQSISKNGASSRNLKNFIESLSRNQASDHPAIVL
YAMIGNDVCNSKADTVPEMTTPEQMYANVMQTLTHLNSHLPNGSHVILYGLPDGTFLWDSLHNRYHPLGQLNKDVTYAQF
FSFLRCLQLNPCNGWMSSNKTLRTLTSERAEQLSNTLKKIATTETFANFDLFYVDFAFHEIIEDWQKRGGQPWQLIEPVD
GFHPNEVASLLQANRVWEKIQLQWPHVLGKENPFNSQIEEVFGDQGGH

The query sequence (length=528) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5w7d:A 528 528 1.0000 1.0000 1.0000 0.0 5w7e:A, 5w7e:B, 5w7f:A, 5w7f:B
2 5w7c:C 420 416 0.6515 0.8190 0.8269 0.0 5w78:B, 5w7c:D
3 5w7b:C 413 417 0.6269 0.8015 0.7938 0.0 5w7a:B, 5w7b:D
4 5w7b:A 94 91 0.1174 0.6596 0.6813 6.14e-41 5w7b:B
5 8any:b 150 70 0.0398 0.1400 0.3000 0.51 7a5f:b3, 7a5g:b3, 7a5h:b, 7a5i:b3, 7a5j:b, 7a5k:b3, 5aj4:Bg, 6gaw:Bg, 6gb2:Bg, 6i9r:b, 3j7y:b, 3j9m:b, 8k2a:Lq, 8k2b:Lq, 7l08:b, 7l20:b, 7nqh:Bg, 7nql:Bg, 7nsh:Bg, 7nsi:Bg, 7nsj:Bg, 6nu2:b, 6nu3:b, 7o9k:b, 7o9m:b, 7odr:b, 7ods:b, 7odt:b, 7of0:b, 7of2:b, 7of3:b, 7of4:b, 7of5:b, 7of6:b, 7of7:b, 7og4:b, 7oi6:b, 7oi7:b, 7oi8:b, 7oi9:b, 7oia:b, 7oib:b, 7oic:b, 7oid:b, 7oie:b, 8oin:Bs, 8oiq:Bs, 8oir:Bs, 8oit:Bs, 5ool:b, 5oom:b, 7pd3:b, 8pk0:b, 7po4:b, 7qh6:b, 7qh7:b, 7qi4:b, 7qi5:b, 7qi6:b, 8qsj:b, 8qu5:b, 6vlz:b, 6vmi:b, 8xt0:Lq, 8xt1:Lq, 8xt2:Lq, 8xt3:Lq, 6ydp:Bg, 6ydw:Bg, 6zm5:b, 6zm6:b, 6zs9:b, 6zsa:b, 6zsb:b, 6zsc:b, 6zsd:b, 6zse:b, 6zsg:b
6 8t5e:A 130 92 0.0473 0.1923 0.2717 1.9
7 8w7y:A 474 28 0.0227 0.0253 0.4286 2.1
8 3a3k:B 429 74 0.0379 0.0466 0.2703 2.4 3a3k:A, 7brg:A, 7brg:B, 7brh:A, 7brh:B, 7bri:A, 7bri:B, 7brj:A, 7brj:B, 7brk:A, 7brk:B, 7brl:A, 7brl:B, 1dp4:A, 1dp4:C, 1t34:A, 1t34:B
9 6rr3:A 257 57 0.0379 0.0778 0.3509 2.6 6rra:A
10 5fg3:A 598 72 0.0360 0.0318 0.2639 3.0 5yt0:A
11 8tkp:B 187 52 0.0322 0.0909 0.3269 4.6 8tkp:E, 7usw:C, 7usw:E, 7usx:C, 7usx:E, 7usy:C, 7usy:E
12 3gri:B 423 30 0.0246 0.0307 0.4333 5.4 3gri:A
13 4n78:A 1184 66 0.0379 0.0169 0.3030 6.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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