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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SHFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASAVLTGDLPTPIA
QEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAKTRLEATLEAR
RSQEMDYFMEIFVPSF

The query sequence (length=176) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2par:B 178 176 0.9943 0.9831 0.9943 5.62e-128 2par:A, 2pau:A, 2pau:B
2 5tk6:A 191 177 0.2614 0.2408 0.2599 1.23e-15 5tk7:A, 5tk8:A, 5tk9:A
3 5tka:A 167 171 0.2500 0.2635 0.2573 2.07e-12
4 3mzo:B 211 184 0.2500 0.2085 0.2391 1.17e-08 3mzo:A, 3mzo:C
5 6zpa:A 173 71 0.1193 0.1214 0.2958 0.004 6zpb:A, 6zpc:A
6 4dmb:B 190 108 0.1818 0.1684 0.2963 0.015 4dmb:A, 4l7w:A
7 4xwh:A 720 81 0.1364 0.0333 0.2963 1.5
8 6sbq:A 891 68 0.1250 0.0247 0.3235 1.5 6ea1:A, 6ea2:A, 6eaa:A, 6eab:A, 3ebg:A, 3ebh:A, 3ebi:A, 6ee3:A, 6ee4:A, 6ee6:A, 6eed:A, 8ewz:A, 8ex3:A, 8eyd:A, 8eye:A, 8eyf:A, 8ez2:A, 4j3b:A, 4k5l:A, 4k5m:A, 4k5n:A, 4k5o:A, 4k5p:A, 3q43:A, 3q44:A, 4r5t:A, 4r5v:A, 4r5x:A, 6sbr:A, 8slo:A, 8svl:A, 8t6h:A, 8t7p:A, 3t8v:A, 8t83:A, 4x2u:A, 5xm7:A, 5y19:A, 5y1h:A, 5y1k:A, 5y1q:A, 5y1r:A, 5y1s:A, 5y1t:A, 5y1v:A, 5y1w:A, 5y1x:A, 5y3i:A, 4zqt:A, 4zw3:A, 4zw5:A, 4zw6:A, 4zw7:A, 4zw8:A, 4zx3:A, 4zx4:A, 4zx5:A, 4zx6:A
9 4fyg:A 743 74 0.1364 0.0323 0.3243 3.6 4fye:A, 4fyf:A
10 3wag:B 401 44 0.0795 0.0349 0.3182 7.3 3wad:A, 3wag:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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