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BioLiP
>protein
SGSPLAQQIKNILSLISQADAAGRMDEVRTLQLNLCQLMVEYFQQGSPLAQQIKNIHSFGHQAWAAGRLDEVLTIQENLY
QLMKEYFQQS

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7bww:A 90 90 1.0000 1.0000 1.0000 5.93e-63 7bww:B, 7bww:C, 7bww:D, 6ypi:A
2 5od9:A 95 94 0.7222 0.6842 0.6915 8.68e-37 5od1:A, 5od9:B
3 3v1d:A 48 45 0.4222 0.7917 0.8444 7.30e-22 3v1c:A, 3v1c:B, 3v1d:F, 3v1d:B, 3v1d:C, 3v1d:E, 3v1d:H, 3v1d:D, 3v1d:G, 3v1e:A, 3v1e:B, 3v1f:A, 3v1f:B
4 3v1d:A 48 45 0.4222 0.7917 0.8444 7.11e-20 3v1c:A, 3v1c:B, 3v1d:F, 3v1d:B, 3v1d:C, 3v1d:E, 3v1d:H, 3v1d:D, 3v1d:G, 3v1e:A, 3v1e:B, 3v1f:A, 3v1f:B
5 7k7m:B 757 59 0.2333 0.0277 0.3559 0.83 7k7m:A, 7n6b:A
6 6aji:A 873 59 0.2333 0.0241 0.3559 0.86
7 6ajf:A 901 59 0.2333 0.0233 0.3559 0.89 6ajg:A, 6ajh:A, 6ajj:A, 7c2m:A, 7c2n:A, 6or2:A, 7wnx:A
8 2bbr:A 189 42 0.1889 0.0899 0.4048 1.9
9 1gxo:A 320 33 0.1333 0.0375 0.3636 8.6
10 3hzl:A 394 27 0.1222 0.0279 0.4074 9.7 2oln:A, 2olo:A, 2q6u:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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