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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SGSKFRGHQKSKGNSYDVEVVLQHVDTGNSYLCGYLKIKGTEEYPTLTTFFEGEIISKKHPFLTRKWDADEDVDRKHWGK
FLAFYQYADFDYEELKNGDYVFMRWKEQFLVPDHTIGASFAGFYYICFQKSAASIEGYYYHRSSEWYQSLNLTHV

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7q50:A 170 166 1.0000 0.9118 0.9337 3.59e-109 6cct:A, 6ccu:A, 6cd8:A, 6cd8:B, 6cd9:A, 6cdc:A, 6cdg:A, 7s12:A, 7slz:A, 7u3e:A, 7u3e:B, 7u3f:A, 7u3g:A, 7u3h:A, 7u3i:A, 7u3i:B, 7u3j:A, 7u3k:A, 7u3l:A, 8v1p:A, 6wzx:A, 6wzx:B, 6wzz:A
2 7ns3:4 199 175 0.3806 0.2965 0.3371 4.55e-25
3 7qqy:A 216 193 0.3871 0.2778 0.3109 3.48e-21 7q51:A
4 6g21:A 504 65 0.1161 0.0357 0.2769 0.24 6g21:B
5 3bxu:A 71 43 0.0903 0.1972 0.3256 0.83 3bxu:B
6 3zjh:B 193 97 0.1742 0.1399 0.2784 3.8 3qzx:A, 3qzz:A, 3r0g:A, 3r0g:B, 2veb:A, 2vee:A, 2vee:B, 2vee:C, 2vee:D, 2vee:E, 2vee:F, 2vee:G, 2vee:H, 3zh0:A, 3zh0:B, 3zh0:C, 3zh0:D, 3zjh:A, 3zji:A, 3zji:B, 3zjj:A, 3zjj:B, 3zjj:C, 3zjl:A, 3zjl:B, 3zjm:A, 3zjm:B, 3zjm:C, 3zjn:A, 3zjn:B, 3zjo:A, 3zjo:B, 3zjp:A, 3zjq:A, 3zjq:B, 3zjr:A, 3zjs:A, 3zjs:B, 3zol:A, 3zol:B, 3zom:A, 3zom:B
7 8sm5:I 138 78 0.1097 0.1232 0.2179 4.9
8 5ykb:D 523 96 0.1355 0.0402 0.2188 5.9 5ykb:B
9 6j15:D 106 35 0.0645 0.0943 0.2857 8.1
10 8c8j:A 698 39 0.0774 0.0172 0.3077 8.7
11 6jjp:F 118 35 0.0645 0.0847 0.2857 8.7 8as0:A, 8as0:F, 8as0:I, 8as0:L, 8as0:O, 8as0:R, 8as0:X, 8as0:Y, 7cu5:Q, 6j15:C, 6jbt:F, 6jjp:C, 6umt:A, 5wt9:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218