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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SGSKFRGHQKSKGNSYDVEVVLQHVDTGNSYLCGYLKIKGLTEEYPTLTTFFEGEIISKKHPFLTRKWDADEDVDRKHWG
KFLAFYQYFNSDDFDYEELKNGDYVFMRWKEQFLVPDHTIKDISGASFAGFYYICFQKSAASIEGYYYHRSSEWYQSLNL
THV

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7q50:A 170 166 1.0000 0.9588 0.9819 1.30e-119 6cct:A, 6ccu:A, 6cd8:A, 6cd8:B, 6cd9:A, 6cdc:A, 6cdg:A, 7s12:A, 7slz:A, 7u3e:A, 7u3e:B, 7u3f:A, 7u3g:A, 7u3h:A, 7u3i:A, 7u3i:B, 7u3j:A, 7u3k:A, 7u3l:A, 8v1p:A, 6wzx:A, 6wzx:B, 6wzz:A
2 7ns3:4 199 179 0.3926 0.3216 0.3575 4.46e-28
3 7qqy:A 216 193 0.3742 0.2824 0.3161 4.61e-23 7q51:A
4 3cew:A 118 58 0.1166 0.1610 0.3276 0.35 3cew:B, 3cew:C, 3cew:D
5 5ykb:D 523 92 0.1166 0.0363 0.2065 0.53 5ykb:B
6 4yan:A 252 122 0.1902 0.1230 0.2541 2.1 4yan:B, 4yan:C, 4yan:D
7 4n7t:A 402 95 0.1534 0.0622 0.2632 2.1 3m7v:A, 3m7v:B, 4n7t:B
8 4eu2:N 233 69 0.0982 0.0687 0.2319 2.3 5d0t:M, 4eu2:2, 5l5w:M, 4q1s:a, 4q1s:M
9 3bxu:A 71 47 0.0859 0.1972 0.2979 3.3 3bxu:B
10 6g21:A 504 28 0.0736 0.0238 0.4286 4.9 6g21:B
11 6sz6:A 836 37 0.0920 0.0179 0.4054 5.4
12 6j15:D 106 35 0.0613 0.0943 0.2857 8.1
13 6jjp:F 118 35 0.0613 0.0847 0.2857 9.0 8as0:A, 8as0:F, 8as0:I, 8as0:L, 8as0:O, 8as0:R, 8as0:X, 8as0:Y, 7cu5:Q, 6j15:C, 6jbt:F, 6jjp:C, 6umt:A, 5wt9:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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