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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SGSEAYFDNSKYGWKDVYVYAYGTKENAEWPGELMTKEDSGLYKASFASSFKSEKIIFNNGLEKGNGKEQYPEAAGLSLK
AGECKMLTAEKQWIDYGKPDDHAYGYTLTANNTAFSTESLDVKLALKNADKGYYSVDGSAKKEFANGDSVKVGEGKIGNS
KVTLTLYATGADGVETEQTYTFKKTFTASKTTFSAKSDGHTTAPESGYYGTNPEMQLGKHKTISVDGDLSDWDSSMIIAQ
GVANDDPRVYMPSSMHEQPWDAYALYSAWDDDNLYFLLEMANTTYITSPEDNFAASNEARPWRNSIPMYLALSIDPAKQA
TGKAVGTNKDGSVYTNPFVWGCTNGTAKDGGTGFTTHIDTLVAFDSNNSNGGASIFKADTQDTDGTYMFNYDTRIPIGVT
SFQAQDNKNGFKIKYANGTKSTSIFGINAPKGSRVMGDNLDMNSNWVDFFDEGYKNSYGYVYEIAVPLNTLGIDRSYIET
QGIGAMQILTYGTSGMDTLPHDPSMLDQANLEYSYDPSTSHEKEDIDNITVPLARIGALLPDTEVNEAPFEVNFGANLNS
GQSAGTPITLLAESYHATGDVTYSFTVNGETVTDSCVWTPSADGTYSIGVVAVDANGNKAESTKTFVV

The query sequence (length=628) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7uww:A 632 632 1.0000 0.9937 0.9937 0.0 7uwu:A, 7uwu:B, 7uwv:A, 7uww:B
2 4u03:A 389 73 0.0318 0.0514 0.2740 1.2 4txy:A, 4txz:A, 4ty0:A, 4u03:B, 4u0m:A, 4u0m:B, 4u0n:A, 4u0n:B, 4xj4:A
3 5db4:B 175 105 0.0446 0.1600 0.2667 1.6
4 3b0h:A 536 93 0.0303 0.0354 0.2043 1.9 3b0h:B
5 2yn3:C 284 29 0.0239 0.0528 0.5172 2.6 2yn3:A, 2yn3:B, 2yn3:D, 2yn5:A, 2yn5:B
6 6a3j:C 378 50 0.0207 0.0344 0.2600 8.1 6a3g:A, 6a3g:B, 6a3g:C, 6a3g:D, 6a3i:A, 6a3i:B, 6a3i:C, 6a3i:D, 6a3j:A, 6a3j:B, 6a3j:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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