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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SGRENLYFQGMIPEHLSIYTAYNANIAAIVKLNQETIQNLINAFDPDEVKRRIEEYPREINEPIDFVARLVHTLKLGKPA
AVPLVNEKMNEWFDKTFRYEEERLGGQAGIIANTLAGLKIRKVIAYTPFLPKRLAELFKKGVLYPVVENGELQFKPIQEA
YREGDPLKINRIFEFRKGLKFKLGDETIEIPNSGRFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKY
SDGKDANYYLRRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSVLGYRELADRIFTY
NRLEDSILGGMIILDELNFEILQVHTTYYLMYITHRDNPLSEEELAKSLEFGTTLAAARASLGDIRGPDDYKVGLKVPFN
ERSEYVKLRFEEAKSRLRMREYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLEFLKRH

The query sequence (length=460) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3drw:A 460 460 1.0000 1.0000 1.0000 0.0 3drw:B
2 5k27:A 453 444 0.5522 0.5607 0.5721 3.56e-171 5k27:B, 5kkg:A
3 5od2:B 458 447 0.4826 0.4847 0.4966 1.15e-146 5od2:A, 5od2:C
4 6c8z:A 488 464 0.4239 0.3996 0.4203 7.73e-115 6xio:A
5 1gc5:A 467 456 0.3130 0.3084 0.3158 7.62e-47 4b8s:A
6 5o0j:A 453 445 0.3130 0.3179 0.3236 1.16e-46
7 1ua4:A 454 455 0.3000 0.3040 0.3033 9.16e-42
8 5o5z:A 454 346 0.2326 0.2357 0.3092 2.60e-37 5o5y:B, 5o5z:B
9 5o5z:A 454 30 0.0304 0.0308 0.4667 0.015 5o5y:B, 5o5z:B
10 5ck7:A 448 392 0.1957 0.2009 0.2296 5.12e-07
11 3ivt:B 400 97 0.0674 0.0775 0.3196 0.73 3ivs:A, 3ivs:B, 3ivt:A, 3ivu:A, 3ivu:B, 3mi3:A, 3mi3:B
12 6m5z:A 433 71 0.0457 0.0485 0.2958 0.96 6m5z:B
13 3m6w:A 460 90 0.0587 0.0587 0.3000 1.8 3m6v:A, 3m6v:B
14 3u67:A 218 44 0.0391 0.0826 0.4091 5.3 3h80:A, 3q5j:A, 3q5k:A, 3q5l:A, 3q5l:B, 3q5l:C, 3q5l:D
15 7x3t:V 792 99 0.0587 0.0341 0.2727 5.5 6iro:L, 6jyl:K, 6k1p:K, 7x3w:K, 2y9z:A
16 1efp:A 307 78 0.0478 0.0717 0.2821 6.6 1efp:C
17 6dtd:A 1053 115 0.0609 0.0266 0.2435 8.1
18 6yjo:A 475 52 0.0283 0.0274 0.2500 9.3
19 6aok:A 213 82 0.0543 0.1174 0.3049 9.6 6aoj:A
20 4h1g:A 670 58 0.0348 0.0239 0.2759 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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