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BioLiP
>protein
SGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRVDSLY
SPGMTIEVTAAADSGALVVHFRDVT

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3fg8:A 106 104 0.9905 0.9811 1.0000 1.66e-73 3fg8:B, 3fg8:C, 3fg8:D, 3fg8:E, 3fg8:F
2 7cxz:A 245 106 0.2762 0.1184 0.2736 0.084
3 1d06:A 130 62 0.1333 0.1077 0.2258 0.64 1ew0:A
4 8upk:A 739 69 0.1714 0.0244 0.2609 1.2 8uph:A, 8uph:B, 8upk:B, 8upm:A, 8upm:B
5 7y5e:2N 166 51 0.1619 0.1024 0.3333 2.8 7y5e:22, 7y7a:27, 7y7a:2o
6 8wue:A 226 83 0.2190 0.1018 0.2771 2.8 7w2c:A, 7w2c:C, 7w2c:E, 7w2c:B, 7w2c:D, 7w2c:F, 7w2c:G, 7w2c:H, 7w2c:I, 7w2c:J, 7w2c:K, 7w2c:L, 7w2d:A, 7w2d:C, 7w2d:E, 7w2d:B, 7w2d:D, 7w2d:F, 7w2d:G, 7w2d:H, 7w2d:I, 7w2d:J, 7w2d:K, 7w2d:L, 7w2f:A, 7w2f:B, 7w2f:C, 7w2f:D, 7w2f:E, 7w2f:F, 7w2f:G, 7w2f:H, 7w2f:I, 7w2f:J, 7w2f:K, 7w2f:L, 7w2g:A, 7w2g:B, 7w2g:C, 7w2g:D, 7w2g:E, 7w2g:F, 7w2g:G, 7w2g:H, 7w2g:I, 7w2g:J, 7w2g:K, 7w2g:L, 7w2h:A, 7w2h:C, 7w2h:E, 7w2h:B, 7w2h:D, 7w2h:F, 7w2h:G, 7w2h:H, 7w2h:I, 7w2h:J, 7w2h:K, 7w2h:L, 7w2h:M, 7w2h:N, 7w2h:O, 7w2h:P, 7w2h:Q, 7w2h:R, 7w2h:S, 7w2h:T, 7w2h:U, 7w2h:V, 7w2h:W, 7w2h:X, 8w4b:A, 8w4c:A, 8wue:B, 8wue:C, 8wue:D, 8wue:E, 8wue:F, 8wwb:A
7 3lju:X 373 10 0.0952 0.0268 1.0000 2.9 3feh:A, 3fm8:C, 3fm8:D, 3mdb:C, 3mdb:D
8 7pwh:AAA 203 26 0.1143 0.0591 0.4615 3.6
9 8ch6:V 285 41 0.1429 0.0526 0.3659 4.0 7qtt:V
10 7pu7:A 1070 44 0.1619 0.0159 0.3864 4.0 5lew:A
11 3u67:A 218 10 0.0952 0.0459 1.0000 4.0 3h80:A, 3q5j:A, 3q5k:A, 3q5l:A, 3q5l:B, 3q5l:C, 3q5l:D
12 7y38:A 471 35 0.1048 0.0234 0.3143 4.1 8aov:A, 8aov:C, 8aov:E, 8aov:G, 8aov:I, 8aov:K, 8aov:M, 8aov:O, 8aov:Q, 8aov:S, 8aov:V, 8aov:X, 8aow:A, 8aow:C, 8aow:E, 8aow:G, 8aow:I, 8aow:K, 8aow:M, 8aow:O, 8aow:Q, 8aow:S, 8aow:V, 8aow:X, 8aox:JA, 8aox:A, 8aox:C, 8aox:E, 8aox:G, 8aox:I, 8aox:K, 8aox:M, 8aox:O, 8aox:Q, 8aox:S, 8aox:V, 8aox:X, 8aox:Z, 8aox:BA, 8aox:DA, 8aox:FA, 8aox:HA, 8aox:LA, 8aox:NA, 8aox:PA, 8aox:RA, 8aox:TA, 8aox:VA, 8apx:A, 8apx:B, 8apx:C, 8apx:D, 8apx:E, 8apx:F, 8apx:G, 8apx:H, 8apx:I, 8apx:J, 8apx:K, 8apx:L, 8axv:A, 8axv:B, 8axv:C, 8axv:D, 8axv:E, 8axv:F, 8axv:G, 8axv:H, 8axv:I, 8axv:J, 8axv:K, 8axv:L, 7dop:A, 7dop:B, 7dop:C, 7dop:D, 7dop:E, 7dop:F, 7dop:G, 7dop:H, 7dop:I, 7dop:J, 7dop:K, 7dop:L, 7fgg:A, 7fgg:B, 7fgg:C, 7fgg:D, 7fgg:E, 7fgg:F, 7fgg:G, 7fgg:H, 7fgg:I, 7fgg:J, 7fgg:K, 7fgg:L, 7fgh:A, 7fgh:B, 7fgh:C, 7fgh:D, 7fgh:E, 7fgh:F, 7fgh:G, 7fgh:H, 7fgh:I, 7fgh:J, 7fgh:K, 7fgh:L, 8jce:A, 8jce:B, 8jce:C, 8jce:D, 8jce:E, 8jce:F, 8jce:G, 8jce:H, 8jce:I, 8jce:J, 8jce:K, 8jce:L, 7x01:A, 7x01:B, 7x01:C, 7x01:D, 7x01:E, 7x01:F, 7x01:G, 7x01:H, 7x01:I, 7x01:J, 7x01:K, 7x01:L, 7y38:B, 7y38:C, 7y38:D, 7y38:E, 7y38:F, 7y38:G, 7y38:H, 7y38:I, 7y38:J, 7y38:K, 7y38:L, 6z0u:A, 6z0u:C, 6z0u:E, 6z0u:G, 6z0u:I, 6z0u:K, 6z0u:M, 6z0u:O, 6z0u:Q, 6z0u:S, 6z0u:V, 6z0u:X, 6z0u:Z, 6z0u:BA, 6z0u:DA, 6z0u:FA, 6z0u:HA, 6z0u:JA, 6z0u:LA, 6z0u:NA, 6z0u:PA, 6z0u:RA, 6z0u:TA, 6z0u:VA, 6z0v:A, 6z0v:C, 6z0v:E, 6z0v:G, 6z0v:I, 6z0v:K, 6z0v:M, 6z0v:O, 6z0v:Q, 6z0v:S, 6z0v:V, 6z0v:X
13 2gfq:A 288 12 0.0952 0.0347 0.8333 4.4 2gfq:B, 2gfq:C
14 3drw:A 460 10 0.0952 0.0217 1.0000 4.4 3drw:B
15 8tec:A 448 18 0.1238 0.0290 0.7222 5.3 8tee:A, 8tee:B
16 3dz8:A 178 13 0.0857 0.0506 0.6923 5.7 8a4b:B, 8a4b:D, 8a4c:B, 8a4c:D
17 3vol:A 138 46 0.1619 0.1232 0.3696 6.5 4hi4:A, 4hi4:B, 4hi4:D, 4hi4:G
18 7z36:B 446 24 0.1143 0.0269 0.5000 7.4 6h3a:A, 6h3a:F, 6qaj:A, 6qaj:B, 6qu1:A, 2yvr:A, 2yvr:B, 7z36:A
19 2ch6:A 343 27 0.1048 0.0321 0.4074 8.1 2ch6:B, 2ch6:C, 2ch6:D
20 8i0s:Y 320 36 0.1333 0.0437 0.3889 8.6 8i0t:Y, 8i0u:Y, 8i0v:Y
21 8act:A 873 32 0.0857 0.0103 0.2812 8.9 8act:B, 9f6c:B, 8qyp:A, 8qyq:A, 8qyq:B, 8qyr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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