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BioLiP
>protein
SGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYA
YRFDFQGLAQAC

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3zp5:A 92 92 1.0000 1.0000 1.0000 1.44e-66
2 6vgd:A 98 91 0.8696 0.8163 0.8791 5.16e-59 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
3 4bqa:A 132 90 0.6739 0.4697 0.6889 1.36e-39
4 6da1:B 138 90 0.6739 0.4493 0.6889 1.86e-39 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
5 7jsa:J 88 85 0.5978 0.6250 0.6471 8.94e-37 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
6 1awc:A 110 80 0.5543 0.4636 0.6375 1.32e-35
7 4uuv:A 96 82 0.5652 0.5417 0.6341 1.13e-33 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
8 1dux:C 86 81 0.5435 0.5814 0.6173 7.47e-32 1dux:F
9 1hbx:G 112 65 0.4348 0.3571 0.6154 8.97e-25 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
10 8bzm:H 88 82 0.4457 0.4659 0.5000 6.33e-22 8bzm:B
11 8e67:F 97 79 0.3804 0.3608 0.4430 4.68e-19 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
12 3jtg:A 95 81 0.3804 0.3684 0.4321 4.85e-19
13 1yo5:C 88 83 0.4457 0.4659 0.4940 4.36e-17
14 8eo4:F 95 93 0.3370 0.3263 0.3333 7.03e-07 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 4h03:A 414 68 0.2065 0.0459 0.2794 1.2 3buz:A, 1giq:A, 1giq:B, 1gir:A, 4h0t:A, 4h0v:A, 4h0x:A, 4h0y:A
16 3vnq:A 497 39 0.1304 0.0241 0.3077 1.2 3vnr:A, 3vns:A
17 7uzf:C 602 32 0.1413 0.0216 0.4062 2.0 9b8p:A, 9brd:A, 7khr:C, 7u4t:B, 7u8p:C, 7u8q:B, 7u8r:A, 7unf:M, 7uzg:C, 7uzh:B, 7uzi:B, 7uzj:C, 7uzk:C, 6vq6:C, 6vq7:B, 6vq8:A, 6vq9:C, 6vqa:B, 6vqb:A, 6wlz:C, 6wm2:C, 6wm3:B, 6wm4:A, 6xbw:C, 6xby:A
18 7k5b:B 4524 40 0.1413 0.0029 0.3250 2.9 8bx8:B, 7k58:B, 7kek:B
19 8hvc:A 602 12 0.0978 0.0150 0.7500 3.2 8hvb:A, 8hvd:A
20 6wug:A 312 54 0.1739 0.0513 0.2963 3.4
21 4xr9:A 456 65 0.1957 0.0395 0.2769 3.7
22 5yzg:D 1908 62 0.1848 0.0089 0.2742 3.8 6ahd:D, 8bc8:B, 8bc9:B, 8bca:B, 8bcb:B, 8bcc:B, 8bcd:B, 8bce:B, 8bcf:B, 8bcg:B, 8bch:B, 7bdi:B, 7bdj:B, 7bdk:B, 7bdl:B, 4f92:B, 4f93:B, 6ff7:r, 8h6k:5D, 8h6l:5D, 4kit:B, 5o9z:C, 7os1:B, 8qo9:B, 8qzs:B, 5urj:A, 5urk:A, 5urm:A, 5urm:B, 5xjc:D
23 3gjb:B 271 65 0.2065 0.0701 0.2923 4.6 3gjb:A
24 3wdr:A 330 81 0.1848 0.0515 0.2099 5.9
25 5wf7:B 765 34 0.1196 0.0144 0.3235 6.0 5kji:B
26 5wfd:B 774 34 0.1196 0.0142 0.3235 6.0 5wfc:B
27 5kjh:B 807 34 0.1196 0.0136 0.3235 6.3 5m5g:B
28 5kkl:B 839 34 0.1196 0.0131 0.3235 6.6
29 8z99:H 582 41 0.1304 0.0206 0.2927 6.7 8yhd:I, 8yhd:L, 8yhe:I, 8yhe:L, 8z4j:H, 8z4j:I, 8z4j:L, 8z4l:H, 8z4l:I, 8z4l:L, 8z99:I, 8z99:L, 8z9c:H, 8z9c:I, 8z9c:L, 8z9e:I, 8z9e:L
30 8gl8:A 2290 31 0.1304 0.0052 0.3871 7.9 8gl6:A, 8glj:A, 8glk:A, 8glm:A, 8gln:A
31 8yhe:H 524 33 0.1087 0.0191 0.3030 8.7 8yhd:H
32 7b2e:A 548 41 0.1522 0.0255 0.3415 9.4 7ayg:A, 7ayg:B, 7ayg:C, 7ayg:D, 7ayg:E, 7ayg:F, 7ayg:G, 7ayg:H, 7b2e:B, 7b2e:C, 7b2e:D, 7b2e:E, 7b2e:F, 7b2e:G, 7b2e:H
33 8z9e:H 553 33 0.1087 0.0181 0.3030 9.4
34 8z99:K 372 33 0.1087 0.0269 0.3030 9.4 8yhd:K, 8yhe:K, 8z4j:K, 8z4l:K, 8z9c:K, 8z9e:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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