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BioLiP
>protein
SGPERITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAAAGQIRVFGQ
NDWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPREAPFSSIHLENMLKLSNLGAVI
LPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQDML

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6qlh:A 208 196 1.0000 0.9423 1.0000 1.58e-144 6qli:A, 6qlj:A, 6qlk:A, 6qll:A, 6qlv:A, 6qlv:B, 6qlv:C, 6qlv:D, 6qlv:H, 6qlv:E, 6qlv:F, 6qlv:K, 6qlv:G, 6qlv:I, 6qlv:J, 6qlv:L, 4zaf:A, 4zag:A, 4zal:A, 4zan:A, 4zav:A, 4zaw:A, 4zax:A, 4zay:A, 4zaz:A, 3zqu:A
2 4rhe:B 203 192 0.5255 0.5074 0.5365 4.45e-77 4rhe:A, 4rhe:E, 4rhe:C, 4rhe:D, 4rhe:F
3 6m8v:A 183 192 0.4286 0.4590 0.4375 7.40e-56
4 6qlg:A 188 188 0.4184 0.4362 0.4362 5.65e-46 6qlg:C, 6qlg:B, 6qlg:E, 6qlg:D, 6qlg:F
5 6m8t:A 189 190 0.3827 0.3968 0.3947 5.17e-42 6m8u:A
6 1sbz:D 185 190 0.3827 0.4054 0.3947 9.03e-40 1sbz:A, 1sbz:B, 1sbz:C
7 7km3:F 190 186 0.3724 0.3842 0.3925 9.08e-37 7km2:L, 7km2:D, 7km2:I, 7km2:A, 7km2:B, 7km2:K, 7km2:C, 7km2:E, 7km2:J, 7km2:F, 7km2:G, 7km2:H, 7km3:L, 7km3:D, 7km3:I, 7km3:A, 7km3:B, 7km3:G, 7km3:K, 7km3:C, 7km3:E, 7km3:H, 7km3:J
8 1e20:A 185 77 0.1378 0.1459 0.3506 0.004 1mvl:A, 1mvn:A
9 7rs5:K 346 75 0.1173 0.0665 0.3067 0.67 7rs5:a, 7rs5:b, 7rs5:c, 7rs5:d, 7rs5:e, 7rs5:f, 7rs5:g, 7rs5:h, 7rs6:K, 7rs6:a, 7rs6:b, 7rs6:c, 7rs6:d, 7rs6:e, 7rs6:f, 7rs6:g, 7rs6:h
10 1qzu:A 160 46 0.0765 0.0938 0.3261 2.2 1qzu:B, 1qzu:C, 1qzu:D
11 1gmm:A 126 88 0.1276 0.1984 0.2841 2.8 1uxx:X
12 3qjg:A 171 79 0.0969 0.1111 0.2405 4.1 3qjg:C, 3qjg:B, 3qjg:D, 3qjg:E, 3qjg:F, 3qjg:G, 3qjg:I, 3qjg:H, 3qjg:J, 3qjg:L, 3qjg:K
13 5o9z:L 459 33 0.0612 0.0261 0.3636 8.6
14 6sc2:B 3930 43 0.0816 0.0041 0.3721 9.5 6rla:A, 6rla:B, 6sc2:A
15 4rh7:A 3005 43 0.0816 0.0053 0.3721 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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