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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHL
MLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQF
FLPFSLGKEDGSGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLRKLCVFKKIERHSIH
WPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQKETVYCLNDDDETEVLKEDIIQGFRYGSDIVPFSKV
DEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDDLDMVAIVRYAYDKRANPQVG
VAFPHIKHNYECLVYVQLPFMEDLRQYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTKIPNPR
FQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAK

The query sequence (length=537) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6zhe:C 705 535 0.9832 0.7489 0.9869 0.0 8asc:B, 8asc:F, 8asc:L, 8asc:P, 6erf:B, 6erf:D, 6erf:F, 6erf:H, 6erg:E, 6erg:B, 6erh:B, 6erh:D, 8eza:K, 8eza:B, 8ezb:B, 8ezb:K, 1jey:B, 7k1k:C, 7lsy:B, 7lsy:K, 7lt3:B, 7lt3:K, 7nfe:C, 7su3:C, 5y3r:B, 7z6o:B, 6zha:C, 6zhe:H, 7zt6:B, 7zvt:B, 7zwa:B
2 8bh3:C 668 535 0.9832 0.7904 0.9869 0.0 8bh3:L, 8bhy:C, 8bhy:L, 8bot:H, 8bot:U, 7k0y:C, 7nfc:H, 7sgl:C, 7z87:C, 7z88:C
3 8bhv:b 650 532 0.9441 0.7800 0.9530 0.0 8bhv:j, 8bot:C, 7zyg:B
4 7nfc:C 477 529 0.8883 1.0000 0.9017 0.0
5 6tyw:A 218 233 0.2682 0.6606 0.6180 6.65e-98 6tyt:A, 6tyu:A, 6tyv:A, 6tyx:A, 6tyx:B, 6tyz:A
6 5y58:B 568 142 0.0652 0.0616 0.2465 0.037 5y58:D, 5y58:F, 5y59:B
7 1u2z:C 385 87 0.0391 0.0545 0.2414 0.23 7k6p:K, 7k6q:K, 1u2z:A, 1u2z:B
8 7uuk:C 276 114 0.0521 0.1014 0.2456 0.34 7jm1:A, 7jm1:C, 7jm1:B, 7jm2:A, 7jm2:C, 7jm2:B, 7uuj:A, 7uuj:C, 7uuj:B, 7uuk:A, 7uuk:B, 7uul:A, 7uul:B, 7uul:D, 7uul:C, 7uul:F, 7uul:E, 7uum:A, 7uun:A, 7uuo:B
9 5g5l:A 1480 66 0.0335 0.0122 0.2727 3.8 6h67:A, 6h68:A, 5m3m:A, 5m5y:A, 5m64:A, 5n5y:A, 5n5z:A, 5n60:A, 6rqt:A, 6rrd:A, 6rui:A, 6ruo:A, 6rwe:A, 6tps:A
10 4ci0:A 385 33 0.0261 0.0364 0.4242 6.1 4omf:A
11 3k5n:A 759 91 0.0354 0.0250 0.2088 7.5
12 6ktq:A 399 33 0.0242 0.0326 0.3939 9.5 6ktq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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