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BioLiP
>protein
SGLYVAAKFSESTLDALEELQRSLKLPNPVPRDKLHTTIVYSRVNVPYKVASFEIADKGKLTVFETQSGNRALVLEMDSD
YLSARHSYAKALGASYDYPDYRPHITLSYNIGVLNFSGEYKVPVVLDREYSEELDLEWSD

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7t27:A 140 140 1.0000 1.0000 1.0000 9.24e-101
2 7v01:H 297 101 0.1857 0.0875 0.2574 0.42 8do6:B, 7uzw:H, 7uzx:H, 7uzy:H, 7uzz:H, 7v00:H, 7v02:H
3 4fos:A 263 55 0.1286 0.0684 0.3273 0.44 4fq8:A, 4fq8:B, 4fr5:A, 4fr5:B, 4fsh:A, 3phh:A, 3phi:A, 3phi:B, 3phj:A, 3phj:B
4 2rau:A 350 52 0.1143 0.0457 0.3077 0.82
5 1wff:A 85 40 0.1071 0.1765 0.3750 1.7
6 7jgs:C 614 76 0.1500 0.0342 0.2763 4.2 7jgr:C, 7jk2:C, 7jk3:C, 7jk4:C, 7jk5:C, 7jk6:C
7 4xgc:C 567 76 0.1500 0.0370 0.2763 5.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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