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BioLiP
>protein
SGLTDETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEK
TAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPD
GYWIEILNPNKIAT

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4kyk:A 179 174 1.0000 0.9721 1.0000 4.33e-130 6l0u:A
2 7wt0:A 185 173 0.9138 0.8595 0.9191 1.56e-120 1bh5:A, 1bh5:B, 1bh5:C, 1bh5:D, 1fro:A, 1fro:B, 1fro:C, 1fro:D, 4kyh:A, 4kyh:B, 4kyk:B, 6l0u:B, 4opn:A, 4opn:B, 4pv5:A, 4pv5:B, 1qin:A, 1qin:B, 1qip:A, 1qip:B, 1qip:D, 1qip:C, 3vw9:A, 3vw9:B, 3w0t:A, 3w0t:B, 3w0t:C, 3w0t:D, 3w0u:A, 3w0u:B, 7wsz:A, 7wsz:B, 7wt0:B, 7wt1:A, 7wt1:B, 7wt2:A, 7wt2:B, 4x2a:A, 4x2a:B, 2za0:A, 2za0:B
3 4mtt:A 128 149 0.2931 0.3984 0.3423 1.83e-23 4mtr:A, 4mtr:B, 4mts:B, 4mtt:B
4 1fa5:A 128 146 0.2759 0.3750 0.3288 7.49e-23 1fa5:B, 1fa6:A, 1fa6:B
5 2c21:A 139 145 0.2874 0.3597 0.3448 6.41e-17 2c21:B, 2c21:C, 2c21:D, 2c21:E, 2c21:F
6 6bnn:A 282 178 0.2874 0.1773 0.2809 5.50e-15 6bnx:A, 6bnz:A, 5d7z:A
7 6bnn:A 282 149 0.2586 0.1596 0.3020 1.44e-13 6bnx:A, 6bnz:A, 5d7z:A
8 3l7t:B 133 52 0.0977 0.1278 0.3269 0.48
9 2o7q:A 501 41 0.0862 0.0299 0.3659 0.60 6bmb:A, 6bmq:A, 2gpt:A, 2o7s:A
10 2qh0:A 129 56 0.1034 0.1395 0.3214 1.3
11 6s6b:J 475 45 0.0862 0.0316 0.3333 1.4 6s8b:J, 6s8e:J, 6s91:J, 6sh8:J, 6shb:J, 6sic:J
12 8jun:A 678 81 0.1264 0.0324 0.2716 2.6 8jun:B
13 8jbw:A 364 48 0.0747 0.0357 0.2708 3.3
14 7nf4:A 504 33 0.0747 0.0258 0.3939 6.3 8crd:A, 6ev3:A, 6ev4:A, 6ev5:A, 6ev6:A, 6ev7:A, 6ev8:A, 6ev9:A, 6eva:A, 6evb:A, 6evc:A, 6evd:A, 7nf3:A, 7nf4:B, 8oed:A, 8oeh:A, 8oeo:A, 6r2p:A, 6r2r:A, 6r2t:A, 6r2z:A, 6r30:A, 6r32:A, 6r33:A, 6r34:A, 6r3f:A, 6r3g:A, 6r3i:A, 6r3j:A, 6r3l:A, 6r3n:A, 6r3o:A, 6tib:AAA, 6tic:AAA, 6tie:AAA, 6tih:AAA, 6tij:AAA, 6til:AAA, 6tin:AAA, 6tio:AAA, 4za4:A, 4za5:A, 4za7:A, 4za8:A, 4za9:A, 4zaa:A, 4zab:A
15 8t4e:B 551 50 0.0747 0.0236 0.2600 7.7 8t4f:B, 8t4g:B, 8t4h:B, 8t4i:B, 8t4j:B
16 3oaj:A 310 37 0.0805 0.0452 0.3784 9.5 3oaj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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