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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SGKLRLYKEKLEGYNRFYSIVKTIKMVTLAKYRAAQGRIRTRDFSLRYTELAFSKPQASRDAVVAAKNALVYIPITTNRG
SCGALNSNIVRCIDSVVSSKMVLMPVGKRGIDSFSKLYPDEFRYGIINDMKESMHFGYATFVIENAYEVSKDADRYQVIF
NRFVSAGVQRNAVYNIPSYEKWKEDLADAASSDNQKNRYLFANALQNEEEQLIRDFFDFHAALAVLNAVGENELSEQAAR
LVAVEGQLTNISSLQQRTSSLYNKTRQFGITAALIEILSAMSSLEGNAMKGVRRNKFWEG

The query sequence (length=300) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ap6:G1 300 300 1.0000 1.0000 1.0000 0.0 8ap6:G2, 8ap9:G, 8apa:G1, 8apc:G1, 8apf:G1
2 2w6i:G 263 281 0.2100 0.2395 0.2242 1.36e-11
3 5hkk:G 284 305 0.2433 0.2570 0.2393 1.12e-10 5hkk:O
4 3fks:P 235 222 0.1733 0.2213 0.2342 1.13e-06 7md2:G, 7md3:G
5 2jiz:G 192 282 0.2167 0.3385 0.2305 1.59e-05 4asu:G, 2ck3:G, 2jdi:G, 2jiz:N, 4tt3:G, 4z1m:G
6 1efr:G 122 57 0.0700 0.1721 0.3684 2.86e-04
7 2jj1:G 167 54 0.0700 0.1257 0.3889 3.05e-04 2jj1:N, 2jj2:G, 2jj2:N
8 2jj1:G 167 100 0.0800 0.1437 0.2400 9.0 2jj1:N, 2jj2:G, 2jj2:N
9 3oeh:Y 201 58 0.0667 0.0995 0.3448 0.14 3fks:Y, 2hld:Y, 3oe7:Y, 3oee:Y
10 7nkb:G 251 47 0.0500 0.0598 0.3191 0.89 7nkk:G, 7nkn:G
11 4ka7:A 695 29 0.0467 0.0201 0.4828 2.4 4ka8:A, 4put:A
12 3fz0:B 338 69 0.0667 0.0592 0.2899 5.1 3fz0:A, 3fz0:C, 3fz0:D
13 7si6:A 873 61 0.0533 0.0183 0.2623 7.9 7si3:A, 7si7:A
14 4gfh:A 1102 14 0.0300 0.0082 0.6429 8.7 4gfh:F, 3l4j:A, 3l4k:A, 1pvg:A, 1pvg:B, 1qzr:A, 1qzr:B, 2rgr:A
15 7r5v:O 210 46 0.0533 0.0762 0.3478 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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