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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGM
LTFSGPKIPSGVDAGHSERAIPVSR

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3l1e:A 105 105 1.0000 1.0000 1.0000 4.95e-74
2 4m5s:A 87 82 0.4667 0.5632 0.5976 2.03e-34 4m5t:A, 4m5t:C, 4m5t:E, 4m5t:G
3 6gjh:F 87 85 0.4381 0.5287 0.5412 1.88e-29 6gjh:D, 6gjh:H, 6gjh:B, 4mjh:A, 4mjh:C
4 5lum:A 78 73 0.3714 0.5000 0.5342 4.43e-27 5lum:B, 5lum:D, 5lum:C, 5lum:E
5 6f2r:Q 89 73 0.2952 0.3483 0.4247 1.95e-16 6f2r:T, 6f2r:V
6 3gla:B 99 94 0.2095 0.2222 0.2340 3.99e-04 3gla:A
7 3m85:I 259 68 0.1714 0.0695 0.2647 0.28 3m7n:I, 3m7n:G, 3m7n:H, 3m85:G, 3m85:H
8 8ssz:B 384 44 0.1333 0.0365 0.3182 2.0 6cnj:B, 6cnj:C, 6cnj:E, 6cnk:C, 6cnk:E, 5kxi:B, 5kxi:E, 8st0:B, 8st2:C, 8st2:E, 8st3:B, 8st3:E, 8st4:B, 8st4:E, 6ur8:B, 6usf:E
9 5uwc:G 253 31 0.0952 0.0395 0.3226 4.7
10 7zm7:A 711 41 0.1238 0.0183 0.3171 6.2 7zmb:A, 7zmg:A
11 4v8m:By 189 69 0.1619 0.0899 0.2464 6.5 8ova:By, 8ove:By
12 7d4r:B 215 34 0.1429 0.0698 0.4412 7.2
13 1z1n:X 516 91 0.2381 0.0484 0.2747 7.5
14 2ej9:A 237 50 0.1143 0.0506 0.2400 7.6
15 7k44:A 356 27 0.1143 0.0337 0.4444 9.1
16 6tba:7A 292 33 0.1238 0.0445 0.3939 9.5 6tba:7C, 6tba:7B, 6teh:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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