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BioLiP
>protein
SGGAMHGDSLVQLSDSSFKMVKEVKKGDKVICPLLENQCVEVECVVLSKCEDGTKEFVQLGTDLWITPKHPIRVNGEWKY
PKELGQTVVKTSDYIYQFVLKTGHTMNIGGYECICLGHNFQERVAYHPYLGSQAVVEDLKQMKGWKEGKVIIRSRVRDQI
TNQVKAFIQ

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8r2c:A 169 169 1.0000 1.0000 1.0000 6.50e-126
2 3wr9:A 416 132 0.1716 0.0697 0.2197 0.47 3wku:A, 3wku:B, 3wpm:A, 3wpm:B, 3wr3:A, 3wr3:B, 3wr4:A, 3wr4:B, 3wr8:A, 3wr8:B, 3wr9:B, 3wra:A, 3wra:B, 3wrb:A, 3wrb:B, 3wrc:A, 3wrc:B
3 5trd:A 219 54 0.1065 0.0822 0.3333 1.3 5trd:B
4 3wrg:A 658 47 0.0888 0.0228 0.3191 3.5 7bzl:A, 7dif:A, 7exu:A, 7exv:A, 7exw:A, 8qf2:A, 3wkx:A, 3wre:A
5 1pv9:B 318 78 0.1302 0.0692 0.2821 4.1
6 2imz:A 144 43 0.0828 0.0972 0.3256 6.7 5i0a:A, 3ifj:A, 3ifj:B, 3igd:A, 2imz:B, 5k08:A
7 1jl3:A 137 33 0.0710 0.0876 0.3636 8.8 1jl3:B, 1jl3:C, 1jl3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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