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BioLiP
>protein
SGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
PLDNREWE

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2lgv:A 100 84 0.9091 0.8000 0.9524 1.98e-54 4a0c:D, 8b3g:R, 8b3i:R, 7b5l:R, 7b5m:R, 7b5n:R, 7b5s:R, 8cdk:R, 3dpl:R, 3dqv:R, 3dqv:Y, 4f52:B, 4f52:D, 8gq6:E, 8gq6:D, 8h33:D, 8h33:K, 8h33:L, 8h33:E, 8h34:R, 8h34:Q, 8h34:E, 8h34:D, 8h34:L, 8h34:K, 8h35:E, 8h35:D, 8h35:L, 8h35:K, 8h35:R, 8h35:Q, 8h35:W, 8h35:X, 8h36:E, 8h36:D, 8h37:E, 8h37:D, 8h37:R, 8h37:Q, 8h38:R, 8h3a:R, 8h3f:R, 8h3q:E, 8h3r:E, 8h3r:D, 2hye:D, 8jaq:R, 8jaq:V, 8jas:R, 8jas:V, 8jav:R, 8jav:V, 1ldj:B, 1ldk:C, 5n4w:R, 8or0:B, 8or2:B, 8or3:B, 4p5o:B, 4p5o:D, 7plo:T, 8pql:K, 8q7h:C, 8q7h:D, 8q7r:R, 8qu8:E, 8r5h:R, 6r7i:R, 6r7n:R, 8rhz:C, 8rhz:D, 3rtr:B, 3rtr:D, 3rtr:F, 3rtr:H, 8rwz:R, 8rx0:R, 6ttu:R, 1u6g:B, 8wqa:J, 8wqa:I, 8wqb:I, 8wqb:E, 8wqc:F, 8wqc:J, 8wqe:J, 8wqe:I, 8wqf:I, 8wqf:E, 8wqg:F, 8wqg:J, 8wqh:J, 8wqh:B, 7z8b:R, 7z8r:R, 7z8t:R, 7z8v:R, 7zbz:R
2 4a0c:F 80 84 0.8409 0.9250 0.8810 4.59e-48 8ij1:R, 7shk:R
3 7oni:R 86 82 0.4773 0.4884 0.5122 1.20e-25 2ecl:A, 6v9i:R
4 5a31:B 84 85 0.3750 0.3929 0.3882 1.30e-16 5g04:B, 5g05:B, 9gaw:C, 5jg6:A, 5jg6:D, 2mt5:A, 7qe7:C, 4r2y:A, 4r2y:B, 4r2y:C, 4r2y:D, 8s4g:C, 6tm5:B, 6tnt:B, 4ui9:B
5 8a3t:U 114 81 0.2955 0.2281 0.3210 4.07e-09 8a5y:U
6 2ep4:A 74 24 0.1591 0.1892 0.5833 1.57e-04
7 6w7z:B 71 22 0.1250 0.1549 0.5000 0.001 6w9a:B, 6w9a:D, 6w9d:B, 6w9d:E, 6w9d:H
8 1x4j:A 75 22 0.1250 0.1467 0.5000 0.002
9 4v3k:C 75 22 0.1250 0.1467 0.5000 0.003 7ojx:A, 4v3k:F, 4v3l:C
10 1iym:A 55 47 0.1818 0.2909 0.3404 0.004
11 7t92:C 317 84 0.2386 0.0662 0.2500 0.006
12 6a3z:A 56 21 0.1136 0.1786 0.4762 0.028
13 1chc:A 68 22 0.1250 0.1618 0.5000 0.032
14 2ect:A 78 22 0.1250 0.1410 0.5000 0.072
15 5zbu:A 74 23 0.1250 0.1486 0.4783 0.098 5zbu:D, 5zc4:A, 5zc4:D
16 6f98:A 78 22 0.0909 0.1026 0.3636 0.22
17 2l0b:A 91 22 0.1136 0.1099 0.4545 0.36
18 2kiz:A 69 22 0.1136 0.1449 0.4545 0.36 5lg0:A, 5lg7:A, 7p2k:A
19 2c53:A 228 36 0.1477 0.0570 0.3611 0.45 2c56:A, 1lau:E, 1udh:A
20 7r70:A 150 44 0.1477 0.0867 0.2955 0.71 5d0i:A, 5d0i:B, 5d0k:C, 5d0k:F, 5d0k:I, 5d0k:L, 7r70:B, 7r71:A
21 5din:B 124 27 0.1023 0.0726 0.3333 0.73 5din:A
22 2lxh:C 58 44 0.1250 0.1897 0.2500 1.2 2lxp:C
23 7uhy:D 288 54 0.1818 0.0556 0.2963 1.2
24 5d0m:C 60 41 0.1364 0.2000 0.2927 1.4 5ulh:C, 5ulk:C
25 8adl:A 633 23 0.1136 0.0158 0.4348 1.6 8adl:I
26 4lad:B 69 21 0.1023 0.1304 0.4286 1.9
27 4orh:H 142 22 0.1023 0.0634 0.4091 2.2 4ayc:A, 4ayc:B, 4orh:C, 4orh:G, 4orh:K, 4orh:L, 4whv:C, 4whv:D, 4whv:I, 4whv:J
28 7bvw:A 79 14 0.1023 0.1139 0.6429 3.3 7bvw:B
29 8aaf:e 1527 63 0.1818 0.0105 0.2540 3.4 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
30 6wi7:A 206 22 0.1136 0.0485 0.4545 3.7 2ckl:A, 8grm:M, 2h0d:A, 7nd1:H, 8pp7:K, 8pp7:M, 4r8p:K, 4r8p:M, 3rpg:B, 6wi8:A, 6wi8:B
31 3kic:A 520 29 0.1364 0.0231 0.4138 4.6 3kic:B, 3kic:C, 3kic:D, 3kic:E, 3kic:F, 3kic:G, 3kic:H, 3kic:I, 3kic:J, 3kic:K, 3kic:L, 3kic:M, 3kic:N, 3kic:O, 3kic:P, 3kic:Q, 3kic:R, 3kic:S, 3kic:T, 3kie:A, 3kie:B, 3kie:C, 3kie:D, 3kie:E, 3kie:F, 3kie:G, 3kie:H, 3kie:I, 3kie:J, 3kie:K, 3kie:L, 3kie:M, 3kie:N, 3kie:O, 3kie:P, 3kie:Q, 3kie:R, 3kie:S, 3kie:T
32 5mwl:A 421 27 0.1136 0.0238 0.3704 5.4 5mw8:A, 5mwl:B, 5mwm:A
33 4rso:A 520 29 0.1364 0.0231 0.4138 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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