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BioLiP
>protein
SFTFASPTQVFFNQVDVPTLRPGLVVVFVSSGSQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEA
NEALVKAL

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jdi:H 88 88 1.0000 1.0000 1.0000 4.43e-58 2ck3:H, 2w6j:H
2 4asu:H 83 83 0.4773 0.5060 0.5060 3.14e-11
3 8ap6:H1 161 50 0.2159 0.1180 0.3800 0.019 8ap6:H2, 8ap9:H, 8apa:H1, 8apb:H1, 8apc:H1, 8apd:H1, 8ape:H1, 8aph:H1, 8apj:H1, 8apk:H1
4 6mhc:A 244 25 0.1364 0.0492 0.4800 3.0 1eem:A, 4is0:A, 3lfl:A, 3lfl:B, 3lfl:C, 6mhb:A, 6mhb:B, 6mhb:C, 6mhb:D, 6mhb:E, 6mhb:F, 6mhc:B, 6mhd:A, 6mhd:B, 6pnm:A, 6pnn:A, 6pno:A, 5ueh:A, 5v3q:A, 3vln:A, 4yqm:A, 4yqm:B, 4yqm:C, 4yqu:A, 4yqu:B, 4yqv:A, 4yqv:B, 4yqv:C, 5yvn:A, 5yvo:A
5 5nue:B 332 42 0.1705 0.0452 0.3571 3.6 5nue:A, 5nue:C, 5nuf:A, 5nuf:B, 5nuf:C
6 2oid:A 266 46 0.1818 0.0602 0.3478 4.4 6f3i:A, 2oid:C, 5uis:D, 5w84:B
7 4bed:B 1734 55 0.1932 0.0098 0.3091 6.7 4bed:D, 3qjo:A, 3qjo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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