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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SFSMVTRYAHSPEDIQHYDTSKLRHEFLMEKIFNPGDILLTYTYNDRMIFGGVMPTDEPLEIKLSTELGVDFFLQRRELG
IINIGGAGAITIDGRKDAMSNQDGYYIGMGTQKVVFTSEDRDHPAKFYVVSTPAHKTYPNKKLPFATALAKPMGDQQHLN
KRTIYKYIDASQMDTCQLQMGYTVLEPGSSWNTMTHARRMETYMYFNFADPETRVFHFLGKPDETRHITLFNEQAVVNPS
WSIHCGVGTTNYAFIWAMCGENQTVAMNEL

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7e4s:A 279 279 1.0000 0.9677 0.9677 0.0 7e4s:B, 7e4s:C, 7e4s:D, 7e4s:E, 7e4s:F, 7ye3:A, 7ye3:B, 7ye3:C, 7ye3:D, 7ye3:E, 7ye3:F, 7yrs:A, 7yrs:B, 7yrs:C, 7yrs:D, 7yrs:E, 7yrs:F
2 1xru:A 281 251 0.4741 0.4555 0.5100 8.75e-88 1xru:B
3 2e59:A 144 48 0.0556 0.1042 0.3125 1.2 4g8a:C, 4g8a:D, 3ula:D, 3ula:B, 2z65:C, 2z65:D
4 1ynp:B 298 101 0.0889 0.0805 0.2376 5.9 1ynp:A, 1ynq:A, 1ynq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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