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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SFSMVTRYAHSPEDIQHYDTSKLRHEFLMEKIFNPGDILLTYTYNDRMIFGGVMPTDEPLEIKLSTELGVDFFLQRRELG
IINIGGAGAITIDGRKDAMSNQDGYYIGMGTQKVVFTSEDRDHPAKFYVVSTPAHKTYPNKKLPFATALAKPMGDQQHLN
KRTIYKYIDASQMDTCQLQMGYTVLEPGSSWNTMPAHTHARRMETYMYFNFADPETRVFHFLGKPDETRHITLFNEQAVV
NPSWSIHCGVGTTNYAFIWAMCGENQTYDDMDQVAMNEL

The query sequence (length=279) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7e4s:A 279 279 1.0000 1.0000 1.0000 0.0 7e4s:B, 7e4s:C, 7e4s:D, 7e4s:E, 7e4s:F, 7ye3:A, 7ye3:B, 7ye3:C, 7ye3:D, 7ye3:E, 7ye3:F, 7yrs:A, 7yrs:B, 7yrs:C, 7yrs:D, 7yrs:E, 7yrs:F
2 1xru:A 281 263 0.4910 0.4875 0.5209 1.21e-98 1xru:B
3 2e59:A 144 48 0.0538 0.1042 0.3125 1.4 4g8a:C, 4g8a:D, 3ula:D, 3ula:B, 2z65:C, 2z65:D
4 2btp:A 248 71 0.0609 0.0685 0.2394 3.4 6bcr:A, 6bcr:B, 6bcr:E, 6bcr:F, 6bcy:A, 6bcy:B, 6bcy:E, 6bcy:F, 6bd1:A, 6bd1:B, 6bd1:E, 6bd1:F, 6bd2:A, 6bd2:B, 6bqt:A, 6bqt:B, 6bqt:D, 6bqt:E, 6bqt:G, 6bqt:H, 6bqt:J, 6bqt:K, 2btp:B, 6kzg:A, 6kzg:B, 6kzh:A, 6kzh:B
5 1ynp:B 298 101 0.0860 0.0805 0.2376 6.7 1ynp:A, 1ynq:A, 1ynq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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