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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SFRLQPAPPARPNRCQLFGPGSRPALFEKMAASAADVINLDLEDSVAPDDKAQARANIIEAINGLDWGRKYLSVRINGLD
TPFWYRDVVDLLEQAGDRLDQIMIPKVGCAADVYAVDALVTAIERAKGRTKPLSFEVIIESAAGIAHVEEIAASSPRLQA
MSLGAADFAASMGMQTTGIGGTQENYYMLHDGQKHWSDPWHWAQAAIVAACRTHGILPVDGPFGDFSDDEGFRAQARRSA
TLGMVGKWAIHPKQVALANEVFTP

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4l9y:C 316 264 1.0000 0.8354 1.0000 0.0 4l9y:A, 4l9y:B, 4l9y:D, 4l9y:E, 4l9y:F, 4l9z:A, 4l9z:B, 4l9z:C, 4l9z:D, 4l9z:E, 4l9z:F
2 5ugr:A 323 270 0.5985 0.4892 0.5852 1.53e-107
3 4l80:C 347 265 0.3636 0.2767 0.3623 2.70e-52 6kkh:C, 6kkh:F, 6kkh:I, 6kkh:L, 4l80:A, 4l80:B, 4l80:D, 4l80:F, 4l80:E
4 5vxc:A 301 261 0.2727 0.2392 0.2759 1.88e-23 5vxo:A, 5vxo:B, 5vxo:C
5 1sgj:A 231 259 0.3030 0.3463 0.3089 1.42e-21 1sgj:B, 1sgj:C
6 3oyz:A 376 251 0.2386 0.1676 0.2510 7.79e-12
7 5tao:A 356 251 0.2386 0.1770 0.2510 7.87e-12 3oyx:A, 3pug:A
8 3r4i:A 321 232 0.2424 0.1994 0.2759 1.09e-11 3r4i:B, 3r4i:C, 3r4i:D, 3r4i:E, 3r4i:F
9 6aq4:B 268 248 0.2955 0.2910 0.3145 5.81e-11 6aq4:A, 6aq4:C, 6arb:A, 6arb:B, 6arb:C, 6as5:A, 6as5:C, 6as5:B, 6chu:A, 6cj3:A, 6cj4:A, 1u5v:A, 1z6k:A
10 8khl:A 275 252 0.2727 0.2618 0.2857 2.39e-08 8khl:B, 8khl:C, 8wco:A, 8wco:C, 8wco:B
11 3bs8:A 430 139 0.1250 0.0767 0.2374 1.4
12 8bz6:A 606 86 0.0909 0.0396 0.2791 3.4 8bz6:B, 8bz6:C, 8bz6:D, 8bz6:E, 8bz6:F, 8bz7:A, 8bz7:B, 8bz7:C, 8bz7:D, 8bz7:E, 8bz7:F, 8bz8:A, 8bz8:B, 8bz8:C, 8bz8:D, 8bz8:E, 8bz8:F
13 3pm9:A 465 56 0.0758 0.0430 0.3571 5.2 3pm9:B, 3pm9:C, 3pm9:D, 3pm9:E, 3pm9:F
14 3cux:A 501 34 0.0568 0.0299 0.4412 6.2
15 6z4x:E 323 34 0.0455 0.0372 0.3529 9.4 6z4x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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