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BioLiP
>protein
SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDKV
PDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFT
RRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVAS
NLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHD
DMLNAIERVIADGSVTPDMGGTLSTQQVGAAISDTLARL

The query sequence (length=359) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3flk:A 359 359 1.0000 1.0000 1.0000 0.0 3flk:B, 3flk:C, 3flk:D, 3fmx:X
2 2g4o:A 337 318 0.3649 0.3887 0.4119 4.93e-71 2g4o:D
3 3asj:A 333 360 0.3705 0.3994 0.3694 6.97e-67 3asj:B, 3asj:C, 3asj:D, 4yb4:A, 4yb4:B, 4yb4:C, 4yb4:D
4 6m3s:B 338 355 0.3454 0.3669 0.3493 1.22e-63 6m3s:A
5 2y42:D 355 362 0.3677 0.3718 0.3646 9.20e-63 4f7i:A, 4f7i:B, 4f7i:C, 4f7i:D, 1hex:A, 4wuo:A, 4wuo:B, 2y40:A, 2y40:B, 2y41:A, 2y41:B, 2y42:A, 2y42:B, 2y42:C, 2ztw:A
6 6lky:A 339 357 0.3593 0.3805 0.3613 2.10e-60 6lky:B
7 6xxy:A 358 373 0.3844 0.3855 0.3700 6.94e-60 6xxy:B
8 3ty3:A 358 368 0.3705 0.3715 0.3614 3.27e-56 3ty3:B
9 1cnz:A 363 370 0.3649 0.3609 0.3541 1.93e-55 1cnz:B
10 4y1p:B 336 354 0.3398 0.3631 0.3446 1.10e-54 4y1p:A
11 5hn4:A 329 347 0.3426 0.3739 0.3545 1.89e-53 5hn6:A
12 5j32:A 369 341 0.3287 0.3198 0.3460 2.54e-53 5j32:B, 5j32:C, 5j32:D, 5j33:A, 5j33:B, 5j33:C, 5j33:H, 5j33:D, 5j33:F, 5j33:E, 5j33:G, 5j34:A, 5j34:B, 5j34:C, 5j34:D
13 3vkz:A 364 372 0.3593 0.3544 0.3468 6.83e-53 3vl2:A, 3vl3:A, 3vl4:A, 3vl6:A, 3vl7:A, 3vmj:A, 3wzv:A, 3wzw:A, 3wzx:A, 3wzy:A
14 3vmk:A 369 377 0.3593 0.3496 0.3422 8.42e-51 3vmk:B, 3vml:A
15 2d1c:A 495 333 0.3203 0.2323 0.3453 6.31e-50 2d1c:B
16 6kde:A 336 343 0.3008 0.3214 0.3149 1.78e-45 5gre:A, 5grh:A, 5gri:A, 5grl:A, 8grd:A, 8gru:A, 8gru:C, 6kde:C, 6kdy:A, 6kdy:C, 6kdy:E, 6kdy:G, 6ke3:A, 6ke3:C, 6ke3:E, 6ke3:G, 6l57:A, 6l59:A, 5yvt:A
17 4iwh:A 358 366 0.3454 0.3464 0.3388 5.76e-44 4iwh:B, 4xxv:A, 4xxv:B
18 3blw:F 347 359 0.3036 0.3141 0.3036 1.22e-42 3blw:H, 3blw:J
19 1a05:A 357 371 0.3343 0.3361 0.3235 6.21e-42 1a05:B
20 2iv0:A 412 394 0.3398 0.2961 0.3096 2.46e-38 2iv0:B
21 3blv:C 344 363 0.3175 0.3314 0.3140 5.10e-37 3blv:A, 3blv:E, 3blv:G, 3blw:A, 3blw:C, 3blw:E, 3blw:G, 3blw:I, 3blw:K, 3blw:M, 3blw:O
22 6kdy:D 342 311 0.2646 0.2778 0.3055 2.97e-36 8grd:B, 8gru:B, 8gru:D, 6kdy:B, 6kdy:F
23 5grf:B 335 366 0.2841 0.3045 0.2787 3.29e-30 5gre:B, 5gri:B, 5grl:B, 6l57:B, 6l59:B, 5yvt:B
24 6c0e:A 419 378 0.2981 0.2554 0.2831 1.92e-27 6c0e:B
25 2d4v:A 427 408 0.3036 0.2553 0.2672 4.10e-27 2d4v:B, 2d4v:C, 2d4v:D
26 2e5m:A 403 383 0.2758 0.2457 0.2585 8.14e-27 2e5m:B
27 4aj3:A 416 380 0.2813 0.2428 0.2658 1.71e-23 1ai2:A, 1ai3:A, 4aja:A, 4ajb:A, 4ajc:A, 4ajr:A, 4ajs:A, 1bl5:A, 1cw1:A, 1cw4:A, 1cw7:A, 1gro:A, 1grp:A, 1hj6:A, 9icd:A, 1idc:A, 1ide:A, 1ika:A, 1iso:A
28 1tyo:A 427 391 0.2869 0.2412 0.2634 3.35e-19 1xkd:A, 1xkd:B
29 4aou:A 401 92 0.0724 0.0648 0.2826 0.047
30 2uxq:A 402 92 0.0696 0.0622 0.2717 0.051 4aov:A, 2uxr:B
31 7s8p:R 247 34 0.0306 0.0445 0.3235 0.50 8yrg:R
32 2qfy:A 411 115 0.0836 0.0730 0.2609 0.59 2qfv:A, 2qfv:B, 2qfv:C, 2qfv:D, 2qfx:A, 2qfx:B, 2qfx:C, 2qfx:D, 2qfx:E, 2qfx:F, 2qfy:B, 2qfy:C, 2qfy:D, 2qfy:E, 2qfy:F
33 3fig:B 577 251 0.1699 0.1057 0.2430 0.62 3fig:A, 3hps:A, 3hps:B, 3hpz:A, 3hpz:B, 3hq1:A, 3hq1:B, 1sr9:A, 1sr9:B, 3u6w:A, 3u6w:B
34 1h8l:A 380 66 0.0557 0.0526 0.3030 1.3 1qmu:A
35 5naq:A 461 52 0.0557 0.0434 0.3846 2.7 5naq:B, 5naq:C, 5naq:D, 5naq:E, 5naq:F
36 8gz2:B 1174 48 0.0446 0.0136 0.3333 7.3 8gz1:B
37 8fhd:A 1294 48 0.0446 0.0124 0.3333 7.7
38 6dxp:A 206 68 0.0501 0.0874 0.2647 7.8 6dxp:C, 6dxp:B, 6dxp:D, 8h4j:A, 8h4j:B, 8h4j:C, 8h4j:D, 8h4j:E, 8h4j:F, 8h4j:G, 8h4j:H, 7n2w:A, 7n2w:B, 7n2w:C, 7n2w:D
39 3gip:A 474 55 0.0501 0.0380 0.3273 9.5 3gip:B, 3giq:A, 3giq:B
40 7ze9:CCC 168 38 0.0446 0.0952 0.4211 9.5 7ze9:AAA, 7ze9:BBB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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