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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPD
GWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD
VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA
EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIED
AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII
EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE
IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRF
DMPGFVWNMDQ

The query sequence (length=571) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2p1n:B 571 571 1.0000 1.0000 1.0000 0.0 3c6n:B, 3c6o:B, 3c6p:B, 2p1m:B, 2p1n:E, 2p1o:B, 2p1p:B, 2p1q:B
2 3ogl:B 568 571 0.3292 0.3310 0.3292 6.50e-98 3ogk:B, 3ogk:D, 3ogk:F, 3ogk:J, 3ogk:L, 3ogk:N, 3ogk:P, 3ogk:H, 3ogl:D, 3ogl:F, 3ogl:J, 3ogl:L, 3ogl:N, 3ogl:P, 3ogl:H, 3ogm:B, 3ogm:D, 3ogm:F, 3ogm:J, 3ogm:L, 3ogm:N, 3ogm:P, 3ogm:H
3 2ass:B 325 231 0.1068 0.1877 0.2641 6.00e-08 2ast:B, 7b5m:T
4 2ass:B 325 92 0.0455 0.0800 0.2826 1.2 2ast:B, 7b5m:T
5 8ej4:A 850 93 0.0438 0.0294 0.2688 0.27 8ej4:B, 8ej4:C, 8ej4:D, 8ej4:E, 8ej4:F, 8ej4:G, 8ej4:H, 8ej4:I, 8ej4:J, 8etr:A, 8ri2:A, 8swk:A, 8swk:B, 8swk:C, 8swk:D, 8swk:E, 8swk:F, 8sxn:C, 8sxn:D, 7zgu:A, 7zgu:B, 7zgu:C, 7zgu:D, 7zgu:E, 7zgu:F
6 7vtp:A 795 93 0.0438 0.0314 0.2688 0.28 7alv:A, 7vtp:B, 7vtp:C, 7vtp:D, 7vtp:E, 7vtp:F, 8wsm:A
7 5gr8:A 710 189 0.0841 0.0676 0.2540 0.47 5gr8:D
8 3rg1:J 599 60 0.0368 0.0351 0.3500 1.3 3rg1:A, 3rg1:E, 3rg1:I, 3rg1:M, 3rg1:N
9 7x1i:A 678 59 0.0385 0.0324 0.3729 1.9 7x1i:B, 7x1j:B, 7x1j:A
10 1bcf:A 158 52 0.0298 0.1076 0.3269 2.3 1bcf:B, 1bcf:C, 1bcf:D, 1bcf:E, 1bcf:F, 1bcf:G, 1bcf:H, 1bcf:I, 1bcf:J, 1bcf:K, 1bcf:L, 1bfr:A, 1bfr:B, 1bfr:C, 1bfr:D, 1bfr:E, 1bfr:F, 1bfr:G, 1bfr:H, 1bfr:I, 1bfr:J, 1bfr:K, 1bfr:L, 1bfr:M, 1bfr:N, 1bfr:O, 1bfr:P, 1bfr:Q, 1bfr:R, 1bfr:S, 1bfr:T, 1bfr:U, 1bfr:V, 1bfr:W, 1bfr:X, 4cvp:A, 4cvr:A, 4cvt:A, 3e1j:A, 3e1j:B, 3e1j:C, 3e1j:D, 3e1j:E, 3e1j:F, 3e1j:G, 3e1j:H, 3e1j:I, 3e1j:J, 3e1j:K, 3e1j:L, 3e1l:A, 3e1l:B, 3e1l:C, 3e1l:D, 3e1l:E, 3e1l:F, 3e1l:G, 3e1l:H, 3e1l:I, 3e1l:J, 3e1l:K, 3e1l:L, 3e1m:A, 3e1m:B, 3e1m:C, 3e1m:D, 3e1m:E, 3e1m:F, 3e1m:G, 3e1m:H, 3e1m:I, 3e1m:J, 3e1m:K, 3e1m:L, 3e1n:A, 3e1n:B, 3e1n:C, 3e1n:D, 3e1n:E, 3e1n:F, 3e1n:G, 3e1n:H, 3e1n:I, 3e1n:J, 3e1n:K, 3e1n:L, 3e1o:A, 3e1o:B, 3e1o:C, 3e1o:D, 3e1o:E, 3e1o:F, 3e1o:G, 3e1o:H, 3e1o:I, 3e1o:J, 3e1o:K, 3e1o:L, 3e1p:A, 3e1p:B, 3e1p:C, 3e1p:D, 3e1p:E, 3e1p:F, 3e1p:G, 3e1p:H, 3e1p:I, 3e1p:J, 3e1p:K, 3e1p:L, 3e1q:A, 3e1q:B, 3e1q:C, 3e1q:D, 3e1q:E, 3e1q:F, 3e1q:G, 3e1q:H, 3e1q:I, 3e1q:J, 3e1q:K, 3e1q:L, 3e2c:A, 3e2c:B, 3ghq:A, 3ghq:B, 3ghq:C, 3ghq:D, 3ghq:E, 3ghq:F, 3ghq:G, 3ghq:H, 3ghq:I, 3ghq:J, 3ghq:K, 3ghq:L, 2htn:A, 2htn:B, 2htn:C, 2htn:D, 2htn:E, 2htn:F, 2htn:G, 2htn:H, 6p8k:A, 6p8k:B, 6p8k:C, 6p8k:D, 6p8k:E, 6p8k:F, 6p8k:G, 6p8k:H, 6p8k:I, 6p8k:J, 6p8k:K, 6p8k:L, 6p8l:A, 6p8l:B, 6p8l:C, 6p8l:D, 6p8l:E, 6p8l:F, 6p8l:G, 6p8l:H, 6p8l:I, 6p8l:J, 6p8l:K, 6p8l:L, 2vxi:A, 2vxi:B, 2vxi:C, 2vxi:D, 2vxi:E, 2vxi:F, 2vxi:G, 2vxi:H, 2vxi:I, 2vxi:J, 2vxi:K, 2vxi:L, 2y3q:A, 2y3q:B, 2y3q:C, 2y3q:D, 2y3q:E, 2y3q:F, 2y3q:G, 2y3q:H, 2y3q:I, 2y3q:J, 2y3q:K, 2y3q:L
11 7wge:A 698 73 0.0403 0.0330 0.3151 2.6
12 8sun:B 743 47 0.0298 0.0229 0.3617 3.1 8b8k:A, 8b8k:B, 8b8m:A, 6qp6:A, 6qp6:B, 8sur:B, 8tag:B, 8tai:B, 8tal:B
13 7pzc:A 1010 56 0.0298 0.0168 0.3036 4.0 7pzc:B, 7pzc:C, 7pzc:D, 7pzc:E, 7pzc:F, 7pzc:G, 7pzc:H, 7pzc:I, 7pzc:J
14 6npy:A 798 56 0.0298 0.0213 0.3036 4.7
15 7wbt:A 899 207 0.0893 0.0567 0.2464 4.9 7wbt:B, 7wbu:A
16 7mq8:SA 396 43 0.0263 0.0379 0.3488 6.1 7mq9:SA, 7mqa:SA
17 3rw6:A 245 111 0.0560 0.1306 0.2883 8.1 3rw6:B
18 6vcd:B 255 40 0.0245 0.0549 0.3500 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218