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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDF
VATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIAA

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1t13:A 150 147 1.0000 0.9800 1.0000 2.24e-104 1t13:E, 1t13:B, 1t13:C, 1t13:D
2 2obx:A 150 145 0.6122 0.6000 0.6207 2.78e-64 2obx:E, 2obx:B, 2obx:C, 2obx:D, 2obx:F, 2obx:J, 2obx:G, 2obx:H, 2obx:I
3 1c41:A 165 112 0.2313 0.2061 0.3036 4.51e-12 1c41:E, 1c41:B, 1c41:C, 1c41:D, 1c41:F, 1c41:J, 1c41:G, 1c41:H, 1c41:I
4 1rvv:A 154 105 0.2177 0.2078 0.3048 4.40e-11 1rvv:E, 1rvv:B, 1rvv:C, 1rvv:D, 1rvv:F, 1rvv:G, 1rvv:H, 1rvv:I, 1rvv:J, 1rvv:K, 1rvv:O, 1rvv:L, 1rvv:M, 1rvv:N, 1rvv:P, 1rvv:Q, 1rvv:R, 1rvv:S, 1rvv:T, 1rvv:U, 1rvv:V, 1rvv:W, 1rvv:X, 1rvv:Y, 1rvv:Z, 1rvv:4, 1rvv:1, 1rvv:2, 1rvv:3, 1zis:A, 1zis:E, 1zis:B, 1zis:C, 1zis:D, 1zis:F, 1zis:G, 1zis:H, 1zis:I, 1zis:J
5 1kyv:E 152 106 0.2041 0.1974 0.2830 5.45e-11 2a57:A, 2a57:E, 2a57:B, 2a57:C, 2a57:D, 2a58:A, 2a58:B, 2a58:C, 2a58:D, 2a58:E, 2a59:A, 2a59:E, 2a59:B, 2a59:C, 2a59:D, 1kyv:A, 1kyv:B, 1kyv:C, 1kyv:D, 1kyx:A, 1kyx:E, 1kyx:B, 1kyx:C, 1kyx:D, 1kyy:A, 1kyy:E, 1kyy:B, 1kyy:C, 1kyy:D
6 1nqu:A 154 140 0.2313 0.2208 0.2429 5.10e-10 1nqu:B, 1nqu:C, 1nqu:D, 1nqu:E, 1nqv:A, 1nqv:B, 1nqv:C, 1nqv:D, 1nqv:E, 1nqw:A, 1nqw:B, 1nqw:C, 1nqw:D, 1nqw:E, 1nqx:A, 1nqx:E, 1nqx:B, 1nqx:C, 1nqx:D
7 1c2y:A 155 135 0.2449 0.2323 0.2667 1.71e-09 1c2y:B, 1c2y:C, 1c2y:D, 1c2y:E, 1c2y:F, 1c2y:J, 1c2y:G, 1c2y:H, 1c2y:I, 1c2y:K, 1c2y:O, 1c2y:L, 1c2y:M, 1c2y:N, 1c2y:P, 1c2y:T, 1c2y:Q, 1c2y:R, 1c2y:S
8 2vi5:E 151 107 0.2313 0.2252 0.3178 1.24e-08 2c92:A, 2c92:B, 2c92:C, 2c92:D, 2c92:E, 2c94:A, 2c94:B, 2c94:C, 2c94:D, 2c94:E, 2c97:A, 2c97:B, 2c97:C, 2c97:D, 2c97:E, 2c9b:A, 2c9b:B, 2c9b:C, 2c9b:D, 2c9b:E, 2c9b:F, 2c9b:G, 2c9b:H, 2c9b:I, 2c9b:J, 2c9d:A, 2c9d:B, 2c9d:C, 2c9d:D, 2c9d:E, 2c9d:F, 2c9d:G, 2c9d:H, 2c9d:I, 2c9d:J, 2vi5:A, 2vi5:B, 2vi5:C, 2vi5:D, 2vi5:F, 2vi5:G, 2vi5:H, 2vi5:I, 2vi5:J, 1w19:A, 1w19:B, 1w19:C, 1w19:D, 1w19:E, 1w29:A, 1w29:B, 1w29:C, 1w29:D, 1w29:E
9 1ejb:A 168 110 0.1769 0.1548 0.2364 3.20e-06 1ejb:B, 1ejb:C, 1ejb:D, 1ejb:E
10 4kq6:D 165 110 0.1565 0.1394 0.2091 3.10e-04 4kq6:C, 4kq6:I, 4kq6:J
11 2f59:D 147 154 0.2789 0.2789 0.2662 3.11e-04 2f59:A, 2f59:E, 2f59:B, 2f59:C, 2o6h:A, 2o6h:B, 2o6h:C, 2o6h:D, 2o6h:E
12 8a22:Ao 117 32 0.0816 0.1026 0.3750 0.90 8apn:Ao, 8apo:Ao
13 6tmf:d 582 73 0.1429 0.0361 0.2877 1.1 3ozx:A, 3ozx:B
14 6ftf:B 291 101 0.1973 0.0997 0.2871 1.2 6hyi:B, 6hyq:A, 6hyq:B, 6hyq:C, 6hyq:D
15 8crx:M 98 25 0.0748 0.1122 0.4400 1.9 8cvo:M
16 8wi9:k 80 37 0.0884 0.1625 0.3514 2.1
17 6dzi:s 99 25 0.0748 0.1111 0.4400 2.2 6dzk:J, 8fr8:l, 7kgb:j, 7msc:j, 7msh:j, 7msm:j, 7msz:j, 7mt2:j, 7mt3:j, 7mt7:j, 5o5j:J, 5o61:BJ, 7sfr:j, 5v93:j, 8v9j:j, 8v9k:j, 8v9l:j, 8whx:k, 8wi7:k, 8wib:k, 8wid:k, 8wif:k, 5xyu:J, 5zeb:j, 5zep:j, 5zeu:j
18 8jev:A 556 84 0.1633 0.0432 0.2857 2.3 8jev:B
19 7pth:A 517 71 0.1429 0.0406 0.2958 3.9 6fny:A, 6fny:B, 6fny:C, 6fny:D, 6fny:E, 6fny:F, 6fny:G, 6fny:H, 6g5z:A, 6g5z:B, 6g5z:C, 6g5z:D, 6g60:A, 6g60:B, 6g60:C, 6g60:D, 7pth:B, 7pth:C, 7pth:D, 7ptj:A, 7ptj:B, 7ptj:C, 7ptj:D
20 8jgj:A 684 66 0.1361 0.0292 0.3030 5.2 8jgj:B, 8jgk:A, 8jgk:B, 8jgl:A, 8jgl:B, 8jgv:A, 8jgv:B
21 6vij:B 191 118 0.1701 0.1309 0.2119 5.9 6vii:B, 6vii:A, 6vij:A, 6vik:B
22 5xyi:J 162 40 0.0748 0.0679 0.2750 6.4
23 1i7q:A 517 56 0.1088 0.0309 0.2857 6.9 1i7q:C, 1i7s:A, 1i7s:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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