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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SFIKSLENRRTIYALGRNVQDEEKVIETIKEAVRFSPTAFNSQTGRLLILTGDAQDKLWDEIVAPELKAAMEAAKLDGFK
AAFGTILFFEDQAVVKNLQEQFALYADNFPVWSEQGSGIISVNVWTALAELGLGANLQHYNPLIDEAVAKEWNLPESWKL
RGQLVFGSIEAPAGEKTFMDDADRFIVAK

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bn9:A 191 191 1.0000 0.9895 0.9895 2.50e-136 4bn6:A, 4bn7:A, 4bn8:A, 4bnb:A, 2wqf:A
2 2ifa:B 201 195 0.5079 0.4776 0.4923 2.09e-62 2ifa:A, 2ifa:C, 2ifa:D, 2ifa:E, 2ifa:F
3 8cqv:A 202 197 0.4497 0.4208 0.4315 8.12e-49 8cqv:B
4 1ywq:A 199 187 0.3968 0.3769 0.4011 6.39e-48
5 8cqt:B 164 39 0.0847 0.0976 0.4103 0.24 8cqt:A
6 3gnr:A 478 95 0.1270 0.0502 0.2526 0.29 3wba:A, 3wbe:A
7 1v5y:A 217 89 0.1376 0.1198 0.2921 0.39 1v5y:B, 1v5z:A, 1v5z:B, 1vfr:A, 1vfr:B
8 5j62:B 209 142 0.1852 0.1675 0.2465 1.00 5j62:A
9 6ozj:B 250 99 0.1481 0.1120 0.2828 1.1 6ozj:A, 6ozk:A, 6ozk:B, 6ozl:A, 6ozl:B, 6ozm:A, 6ozm:B, 6ozn:A, 6ozn:B, 6ozo:A, 6ozo:B, 6ozp:A, 6ozp:B, 6ozq:A, 6ozq:B, 6ozr:A, 6ozr:B, 6ozs:A, 6ozs:B
10 2b67:A 201 47 0.0741 0.0697 0.2979 1.3 2b67:B, 2b67:C, 2b67:D
11 4a15:A 596 75 0.1217 0.0386 0.3067 1.4 5h8w:A, 2vsf:A
12 6ciz:C 477 57 0.1111 0.0440 0.3684 1.6 6chi:A, 6chi:B, 6chi:C, 6chi:D, 6cir:A, 6cir:B, 6cir:C, 6cir:D, 6ciz:A, 6ciz:B, 6ciz:D, 8fda:A, 8fda:B, 8fda:C, 8fda:D, 5irq:A, 5irq:B, 5irq:C, 5irq:D, 5irv:A, 5irv:B, 5irv:C, 5irv:D, 4nkv:A, 4nkv:B, 4nkv:C, 4nkv:D, 4nkw:A, 4nkw:B, 4nkw:C, 4nkw:D, 4nkx:A, 4nkx:B, 4nkx:C, 4nkx:D, 4nky:A, 4nky:B, 4nky:C, 4nky:D, 4nkz:A, 4nkz:B, 4nkz:C, 4nkz:D, 3ruk:A, 3ruk:B, 3ruk:C, 3ruk:D, 3swz:A, 3swz:B, 3swz:C, 3swz:D, 5uys:A, 5uys:B, 5uys:C, 5uys:D, 6wr0:A, 6wr0:B, 6wr0:C, 6wr0:D, 6wr1:A, 6wr1:B, 6ww0:A, 6ww0:B, 6ww0:C, 6ww0:D
13 4xoq:A 204 114 0.1534 0.1422 0.2544 1.7 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
14 4r73:A 321 93 0.1323 0.0779 0.2688 2.3 4r73:B, 4r74:A, 4r74:B, 4r74:C, 4r74:D, 4r75:A
15 4kqx:B 335 49 0.0794 0.0448 0.3061 2.7 4kqw:A, 4kqw:B, 4kqx:A
16 3mwc:A 388 54 0.0847 0.0412 0.2963 3.3
17 2r01:A 195 51 0.0847 0.0821 0.3137 3.5
18 3koq:A 173 37 0.0688 0.0751 0.3514 4.0 3h4o:A, 3koq:B, 3koq:C, 3koq:D
19 6i97:A 763 40 0.0635 0.0157 0.3000 5.8 8b43:A, 6i96:A, 6i97:B, 6i98:A, 6z8a:A
20 3ge6:A 210 49 0.0688 0.0619 0.2653 6.1 3ge6:B
21 2pqj:A 233 57 0.1058 0.0858 0.3509 6.4 2pqj:B, 2pqj:C
22 6ajc:A 413 40 0.0688 0.0315 0.3250 6.5 6ajc:B, 6ajc:C, 6ajc:D, 6ajc:E, 6ajc:F, 6ajc:G, 6ajc:H
23 7vgb:A 681 69 0.1005 0.0279 0.2754 8.0 7vgb:B, 7vgc:A
24 2v25:A 231 90 0.1217 0.0996 0.2556 9.8 2v25:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218