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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SFEKWGQPGHFDRTLAKGPKTTTWIWNLHALAHDFDTHTSDLEDISRKIFAAHFGQLAVIFLWLSGMEFHGARFSNYEAW
LSDPIGIKPSAQVVWPIVGQDILNADVGGGFHGIQITSGLFQVWRAAGFTNSFQLYVTAIGGLVAAALMLFAGWFHYHKR
APKLEWFQNAESMLNHHLAGLLGLGCLSWAGHQIHVALPVNKLLDAGVAPKDIPLPHEFILNNSLMAELYPSFAKGLTPF
WTLNWGQYADFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSIKEILENHKGPFTGDGHKGLYEN
MTTSWHAQLGTNLAMLGSLTIIVAHHMYAMPPYPYLATDYATALSIFTHHMWIGGFLIVGGAAHATIFMVRDYDPAVNQN
NVLDRVIRHRDAIISHLNWVCMFLGFHSFGLYIHNDTMQALGRPQDMFSDTAIQLQPVFAQFVQNIHTLAPGSTAPNALE
PVSYAFGGGVVAVGGKIAMMPIALGTADFMIHHIHAFQIHVTVLILLKGFLFARNSRLIPDKANLGFRFPCDGPGRGGTC
QVSGWDHVFLGLFWMFNTIAIAVYHFSWKMQSDVWGTIDPDGTIAHITGGNFAMSANTINGWLRDYQWAQAAQVIQSYGS
ALSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPTIQPRALSIIQGRAVGVAHYLLGAIVTIWAFF
EARIISVG

The query sequence (length=728) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7qco:A 728 728 1.0000 1.0000 1.0000 0.0 7qco:E, 7qco:e, 7qco:a
2 6k61:A 742 728 0.8695 0.8531 0.8695 0.0 6jeo:aA, 6jeo:bA, 6jeo:cA, 6jeo:dA, 6k61:a, 6tcl:A1, 6tcl:A2, 6tcl:A, 6tcl:AA, 7y3f:A
3 6tra:A 746 732 0.8585 0.8378 0.8538 0.0 4fe1:A, 7fix:A1, 7fix:A2, 7fix:A3, 1jb0:A, 6k33:aA, 6k33:bA, 6k33:cA, 6lu1:A, 7m75:A, 7m76:A, 7m78:A, 3pcq:A, 6pfy:A, 6pfy:G, 6pfy:Y, 6pgk:A, 6pgk:G, 6pgk:Y, 6trc:A, 6trc:a, 6trc:1, 6trd:A, 6trd:a, 6trd:1, 5zf0:A1, 5zf0:A2, 5zf0:A3, 5zf0:A4, 5zf0:A6, 5zf0:A5
4 7y5e:AN 745 728 0.8379 0.8188 0.8379 0.0 7y5e:A2, 7y7a:A7, 7y7a:Ao
5 8wm6:A 742 728 0.8255 0.8100 0.8255 0.0 8wmj:A, 8wmv:A, 8wmw:A, 7y7b:A, 7y8a:A
6 5oy0:A 751 728 0.8324 0.8069 0.8324 0.0 8am5:a, 8asl:a, 8asp:a, 6hqb:A, 4kt0:A, 4l6v:A, 4l6v:a, 4l6v:1, 6nwa:A, 6nwa:a, 6nwa:H, 7o1v:A, 5oy0:a, 5oy0:1, 7umh:A, 7umh:H, 7umh:a, 6uzv:A, 6uzv:a, 6uzv:1, 6vpv:A, 6vpv:a, 6vpv:1
7 7blz:A 743 728 0.8297 0.8129 0.8297 0.0 6fos:A, 8wey:A, 5zgb:A, 5zgh:A
8 7dr0:A 739 728 0.8118 0.7997 0.8118 0.0 7dr1:A, 7dr2:aA, 7dr2:bA, 7dr2:cA, 7dr2:dA
9 7yca:A 742 728 0.8173 0.8019 0.8173 0.0 7a4p:A, 7bgi:A, 7blx:A, 8cmo:A, 7d0j:A, 7dz7:A, 7dz8:A, 8h2u:A, 6ijj:A, 6ijo:A, 6jo5:A, 6jo6:A, 7r3k:A, 7wyi:A, 7wzn:A, 7zq9:A, 7zqc:A, 7zqd:A, 7zqd:A2, 6zzx:A, 6zzy:A
10 6kif:A 751 741 0.8269 0.8016 0.8124 0.0 6kif:G, 6kif:e, 6kig:A, 6kig:G, 6kig:e
11 5l8r:A 743 729 0.8091 0.7927 0.8080 0.0 8bcv:A, 8bcw:A, 7dkz:A, 7ew6:A, 7ewk:A, 7f9o:A, 7f9o:e, 8htu:A, 8j6z:A, 8j7a:A, 8j7b:A, 7ksq:A, 7kux:A, 6l35:A, 3lw5:A, 2o01:A, 4rku:A, 7wfd:AA, 7wfe:BA, 7wg5:AA, 7wg5:BA, 8wgh:A, 2wsc:A, 2wse:A, 2wsf:A, 4xk8:A, 4xk8:a, 7xqp:A, 4y28:A, 6yac:A, 6yez:A, 5zji:A, 6zoo:A, 6zxs:A
12 6ly5:a 742 727 0.8008 0.7857 0.8019 0.0 6l4u:A
13 6igz:A 740 728 0.7967 0.7838 0.7967 0.0 6qph:A, 6rhz:A, 6sl5:A, 6yxr:A
14 7s3d:A 749 737 0.7871 0.7650 0.7775 0.0 7s3d:G, 7s3d:a
15 6kmw:aA 721 721 0.7940 0.8017 0.8017 0.0 6kmw:bA, 6kmw:cA
16 7lx0:G 751 740 0.8049 0.7803 0.7919 0.0 7lx0:a, 7lx0:A, 6pnj:A, 6pnj:G, 6pnj:a
17 7dwq:A 726 724 0.7486 0.7507 0.7528 0.0
18 7coy:aA 685 713 0.7170 0.7620 0.7321 0.0 7coy:bA, 7coy:cA
19 6kmx:aA 717 717 0.7390 0.7503 0.7503 0.0 6kmx:bA, 6kmx:cA
20 7f4v:aA 772 762 0.7294 0.6878 0.6969 0.0 7f4v:bA, 7f4v:cA
21 8jjr:a 665 725 0.4629 0.5068 0.4648 0.0
22 8jze:a 670 727 0.4396 0.4776 0.4402 0.0 8jzf:a
23 7f4v:aB 725 747 0.4753 0.4772 0.4632 0.0 7f4v:bB, 7f4v:cB
24 6kmw:aB 740 765 0.4725 0.4649 0.4497 0.0 6kmw:cB, 6kmw:bB
25 8jw0:a 645 714 0.4670 0.5271 0.4762 0.0
26 6ly5:b 732 752 0.4560 0.4536 0.4415 0.0 6l4u:B
27 6vpv:B 737 757 0.4657 0.4600 0.4478 0.0 8am5:b, 8asl:b, 8asp:b, 6hqb:B, 4kt0:B, 4l6v:B, 4l6v:b, 4l6v:2, 6nwa:B, 6nwa:b, 6nwa:G, 7o1v:B, 5oy0:B, 5oy0:b, 5oy0:2, 7umh:B, 7umh:G, 7umh:b, 6uzv:B, 6uzv:b, 6uzv:2, 6vpv:b, 6vpv:2
28 7blz:B 731 748 0.4574 0.4555 0.4452 0.0 6fos:B, 8wey:B, 5zgb:B, 5zgh:B
29 7fix:B1 740 761 0.4698 0.4622 0.4494 0.0 7bw2:B, 4fe1:B, 7fix:B2, 7fix:B3, 1jb0:B, 6k33:aB, 6k33:bB, 6k33:cB, 7m75:B, 7m76:B, 7m78:B, 3pcq:B, 6pfy:H, 6pfy:B, 6pfy:Z, 6pgk:H, 6pgk:B, 6pgk:Z, 6tra:B, 6trc:B, 6trc:b, 6trc:2, 6trd:B, 6trd:b, 6trd:2, 5zf0:B1, 5zf0:B2, 5zf0:B3, 5zf0:B4, 5zf0:B6, 5zf0:B5
30 6kif:B 733 764 0.4643 0.4611 0.4424 0.0 6kif:H, 6kif:f, 6kig:B, 6kig:H, 6kig:f
31 7s3d:B 742 762 0.4588 0.4501 0.4383 0.0 7s3d:H, 7s3d:b
32 7d0j:B 734 753 0.4533 0.4496 0.4382 0.0 7a4p:B, 7bgi:B, 7blx:B, 8cmo:B, 7dz7:B, 7dz8:B, 8h2u:B, 6ijj:B, 6ijo:B, 6jo5:B, 6jo6:B, 6qph:B, 7r3k:B, 6rhz:B, 6sl5:B, 7wyi:B, 7wzn:B, 6yxr:B, 7zq9:B, 7zqc:B, 7zqd:B, 7zqd:B2, 6zzx:B, 6zzy:B
33 6igz:B 733 753 0.4519 0.4488 0.4369 0.0
34 7y5e:BN 732 750 0.4533 0.4508 0.4400 0.0 7y5e:B2, 7y7a:B7, 7y7a:Bo, 7y7b:B, 7y8a:B
35 8wm6:B 732 752 0.4547 0.4522 0.4402 0.0 8wmj:B, 8wmv:B, 8wmw:B
36 6kmx:aB 727 757 0.4505 0.4512 0.4333 0.0 6kmx:bB, 6kmx:cB
37 7yca:B 732 750 0.4451 0.4426 0.4320 0.0
38 7qco:B 734 753 0.4505 0.4469 0.4356 0.0 7qco:G, 7qco:g, 7qco:b
39 6k61:B 740 761 0.4533 0.4459 0.4336 0.0 6jeo:aB, 6jeo:bB, 6jeo:cB, 6jeo:dB, 6k61:b, 6tcl:B1, 6tcl:B2, 6tcl:B, 6tcl:BB, 7y3f:B
40 6lu1:B 713 754 0.4547 0.4642 0.4390 0.0
41 7wfd:AB 734 753 0.4409 0.4373 0.4263 0.0 8bcv:B, 8bcw:B, 7dkz:B, 7ew6:B, 7ewk:B, 7f9o:B, 7f9o:f, 8htu:B, 8j6z:B, 8j7a:B, 8j7b:B, 7ksq:B, 7kux:B, 6l35:B, 5l8r:B, 3lw5:B, 2o01:B, 4rku:B, 7wfe:BB, 7wg5:AB, 7wg5:BB, 8wgh:B, 2wsc:B, 2wse:B, 2wsf:B, 4xk8:B, 4xk8:b, 7xqp:B, 4y28:B, 6yac:B, 6yez:B, 5zji:B, 6zoo:B, 6zxs:B
42 7lx0:H 739 764 0.4464 0.4398 0.4254 0.0 7lx0:b, 7lx0:B, 6pnj:H, 6pnj:B, 6pnj:b
43 7dr0:B 706 764 0.4464 0.4603 0.4254 0.0 7dr1:B, 7dr2:aB, 7dr2:bB, 7dr2:cB, 7dr2:dB
44 7dwq:B 659 740 0.4162 0.4598 0.4095 8.04e-174 7coy:aB, 7coy:bB, 7coy:cB
45 8jw0:b 617 706 0.3187 0.3760 0.3286 2.60e-103
46 8jjr:b 659 721 0.3132 0.3460 0.3162 4.62e-97
47 8jze:b 663 711 0.2995 0.3288 0.3066 7.06e-94 8jzf:b
48 7zq9:B2 180 192 0.0893 0.3611 0.3385 7.59e-17
49 5v8k:A 600 221 0.0865 0.1050 0.2851 6.06e-15
50 6m32:A 628 230 0.0810 0.0939 0.2565 0.003 6m32:a
51 8gwa:A 667 230 0.0810 0.0885 0.2565 0.004 8gwa:a, 7uea:A, 7uea:a, 7ueb:A, 7ueb:a, 7z6q:A, 7z6q:a
52 7vzg:a 858 120 0.0412 0.0350 0.2500 1.2 7vzg:A, 7vzr:A, 7vzr:a
53 5eku:B 347 51 0.0206 0.0432 0.2941 1.2 5eku:A, 4m37:A, 4m38:A, 4m38:B
54 7mfm:G 1483 54 0.0247 0.0121 0.3333 2.7 7mfm:H, 7mft:G
55 3bn1:A 368 43 0.0247 0.0489 0.4186 4.1 3bn1:B, 3dr4:A, 3dr4:B, 3dr4:C, 3dr4:D, 3dr7:A, 3dr7:B, 3dr7:C, 3dr7:D
56 2ixu:A 338 70 0.0261 0.0562 0.2714 5.1 2ixv:A, 2j8f:A, 2j8g:A, 1oba:A
57 2qxg:A 224 54 0.0302 0.0982 0.4074 5.6 5fah:A, 2qxg:B, 2qxh:A, 2qxi:A, 2qxj:A, 6shh:A, 6shh:B, 6shh:C, 6shh:D, 6shh:H, 6shh:E, 6shh:F, 6shh:G, 6shi:A, 6shi:B, 6shi:C, 6shi:E, 6shi:D, 6shi:H, 6shi:F, 6shi:G, 6sju:A, 6sju:B, 6sju:C, 6sju:E, 6sju:D, 6sju:H, 6sju:F, 6sju:G, 5y9l:A, 5yjk:A
58 3v0h:B 327 63 0.0247 0.0550 0.2857 6.8 3v0h:A
59 3gyy:D 311 179 0.0632 0.1479 0.2570 9.8 3gyy:A, 3gyy:B, 3gyy:C, 2vpn:A, 2vpn:B, 2vpo:A, 2vpo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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