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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SFEKISSLDDIWVGCMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINP
DDAALAEYPVEVKGDDIYVSTKGILPNKAHS

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1sjg:A 112 111 0.9640 0.9554 0.9640 2.45e-76 4p1b:H, 4p1b:I, 4p1c:H, 4p1c:I, 2q3w:A, 1vm9:A
2 2e4p:A 108 102 0.3153 0.3241 0.3431 5.66e-07 2e4p:B, 2e4q:A, 2e4q:C, 2yvj:B
3 3dqy:A 106 91 0.2342 0.2453 0.2857 1.33e-04 4emj:B
4 4nbb:E 114 63 0.2162 0.2105 0.3810 7.24e-04 7buh:A, 7bui:D, 7bui:E, 2de5:D, 2de5:E, 2de5:F, 2de6:D, 2de6:E, 2de6:F, 2de7:D, 2de7:E, 2de7:F, 6llf:D, 6llf:E, 6llf:F, 6llh:D, 6llh:E, 6llh:F, 4nb8:D, 4nb8:E, 4nb8:F, 4nb9:D, 4nb9:E, 4nb9:F, 4nba:D, 4nba:E, 4nba:F, 4nbb:D, 4nbb:F, 4nbc:D, 4nbc:E, 4nbc:F, 4nbd:D, 4nbd:E, 4nbe:D, 4nbe:E, 4nbf:D, 4nbf:E, 4nbf:F, 4nbg:D, 4nbg:E, 4nbg:F, 4nbh:D, 4nbh:E, 4nbh:F, 1vck:A, 3vmg:D, 3vmg:E, 3vmg:F, 3vmh:D, 3vmh:E, 3vmh:F, 3vmi:D, 3vmi:E, 3vmi:F
5 6y9c:A 365 53 0.1712 0.0521 0.3585 0.001 6y8s:A, 6y9d:A, 6y9d:B, 6y9d:C, 6y9d:D, 6y9d:E, 6y9d:F, 6y9d:G, 6y9d:H, 6y9d:I, 6y9d:J, 6y9d:K, 6y9d:L, 6zgp:A, 6zgp:B, 6zgp:C, 6zgp:D, 6zgp:E, 6zgp:F, 6zgp:G, 6zgp:H, 6zgp:I, 6zgp:J, 6zgp:K, 6zgp:L
6 6y8j:A 343 53 0.1712 0.0554 0.3585 0.001
7 7qwt:A 352 74 0.2252 0.0710 0.3378 0.002 7qwt:B, 7qwt:C, 7qwt:D, 7qwt:E, 7qwt:F, 7qwt:G, 7qwt:H, 7qwt:I
8 6wn3:B 328 52 0.1261 0.0427 0.2692 0.003 7szh:A, 7szh:B, 7szh:C, 6wn3:A, 6wn3:C, 6wnb:A, 6wnb:B, 6wnb:C
9 5n0l:A 156 82 0.2342 0.1667 0.3171 0.007 5n0l:B, 5n0l:C, 5n0l:D, 5n0l:E, 5n0l:F
10 7sze:B 329 52 0.1261 0.0426 0.2692 0.008 7sze:A, 7sze:C, 7szf:A, 7szf:B, 7szf:C, 7szg:A, 7szg:B, 7szg:C, 6wnc:A, 6wnc:B, 6wnc:C, 6wnd:A, 6wnd:B, 6wnd:C
11 2qpz:A 103 80 0.1892 0.2039 0.2625 0.080
12 2i7f:A 102 52 0.1351 0.1471 0.2885 0.18 2i7f:B
13 8jng:A 147 53 0.1532 0.1156 0.3208 0.39
14 5bok:A 102 58 0.1532 0.1667 0.2931 0.40
15 4qdc:A 369 48 0.1261 0.0379 0.2917 0.46 4qdd:A, 4qdf:A
16 7pog:A 2382 40 0.1261 0.0059 0.3500 0.48 4dmw:A, 3ho6:A, 3ho6:B, 4r04:A, 3srz:A, 3ss1:A, 7u2p:A, 7uby:B, 7uby:A, 5uqk:A, 5uql:A
17 2zyl:A 359 44 0.1351 0.0418 0.3409 0.49 4qck:A
18 3wv5:B 359 83 0.1712 0.0529 0.2289 0.54 3wvn:B
19 3wv5:A 387 83 0.1712 0.0491 0.2289 0.57 3wvn:A
20 6vsh:C 320 82 0.1802 0.0625 0.2439 0.74 3gke:C, 3gl0:C, 3gl2:C
21 7v28:B 425 51 0.1351 0.0353 0.2941 1.0 7fjl:A, 7fjl:B, 7fjl:C, 7fjl:D, 7fjl:E, 7fjl:F, 7v25:B, 7v25:A, 7v25:C, 7v25:D, 7v25:E, 7v25:F, 7v28:A, 7v28:C, 7v28:D, 7v28:E, 7v28:F
22 3gob:A 342 61 0.1622 0.0526 0.2951 1.1 3gb4:A, 3gb4:B, 3gb4:C, 3gke:A, 3gke:B, 3gl0:A, 3gl0:B, 3gl2:A, 3gl2:B, 3gob:B, 3gob:C, 3gte:A, 3gte:B, 3gte:C, 3gts:A, 3gts:B, 3gts:C, 6vsh:A, 6vsh:B
23 3v3w:A 397 33 0.1171 0.0327 0.3939 1.4 3v4b:A
24 4qdf:B 357 45 0.1171 0.0364 0.2889 1.7
25 3gcf:A 367 87 0.1892 0.0572 0.2414 2.5 3gcf:B, 3gcf:C, 3gcf:D, 3gcf:E, 3gcf:F, 3gcf:G, 3gcf:H, 3gcf:I, 3gcf:J, 3gcf:K, 3gcf:L, 3gcf:M, 3gcf:N, 3gcf:O
26 1j83:A 180 22 0.1081 0.0667 0.5455 3.4 1j83:B, 1j84:A
27 6oq5:A 2346 42 0.0901 0.0043 0.2381 3.5 6oq7:A, 7s0z:B, 7s0z:A
28 4etp:B 287 21 0.0901 0.0348 0.4762 3.7
29 4itm:A 315 54 0.1441 0.0508 0.2963 3.8 4ehy:A, 4itl:A, 4itn:A, 4lkv:A, 4lkv:C
30 8qeo:A 2146 42 0.0901 0.0047 0.2381 4.3
31 8qen:A 2363 42 0.0901 0.0042 0.2381 4.4 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
32 4yzt:A 512 83 0.1802 0.0391 0.2410 6.1
33 3sng:A 267 47 0.1441 0.0599 0.3404 6.1 4dj4:A, 4dj4:B, 4jdg:A
34 7bkb:B 296 68 0.1622 0.0608 0.2647 7.0 7bkb:b, 7bkc:B, 7bkc:b, 7bkd:B, 7bkd:b, 7bke:B, 7bke:b

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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