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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SFEGQMAEYPTISIDRFDRENLRARAYFLSACHKDHMKGLRAPTLKRRLECSLKVYLYCSPVTKELLLTSPKYRFWKKRI
ISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSV
YLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVNKLDMFRNMPEIL
HHLTTDRNTQIHACRHPKAEEYFQWSKLPCGITSRNRIPLHIISIKPSTMWFGERSRKTNVIVRTGESSYRACFSFHSSY
SEIKDFLSYLCPVNAYPNVIPTTMDKVVEILKPLCRS

The query sequence (length=357) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7sgl:D 406 359 0.9972 0.8768 0.9916 0.0 7abs:A, 7af1:A, 7afs:A, 7afu:A, 7agi:A, 7apv:A, 6tt5:AAA, 6wnl:A, 6wnl:B, 6wo0:A
2 7a1f:L 335 343 0.2829 0.3015 0.2945 6.66e-27 7a1f:A, 5aho:A
3 8c8b:A 341 340 0.2801 0.2933 0.2941 1.55e-20 5ahr:A, 4b87:A, 8c8d:A, 8c8s:A, 8cew:A, 8cf0:A, 8cg9:A, 5nzw:A, 5nzx:A, 5nzy:A, 5q1j:A, 5q1k:A, 5q1l:A, 5q1m:A, 5q1n:A, 5q1o:A, 5q1p:A, 5q1q:A, 5q1r:A, 5q1s:A, 5q1t:A, 5q1u:A, 5q1v:A, 5q1w:A, 5q1x:A, 5q1y:A, 5q1z:A, 5q20:A, 5q22:A, 5q23:A, 5q24:A, 5q25:A, 5q26:A, 5q27:A, 5q28:A, 5q29:A
4 8rbx:k 552 71 0.0448 0.0290 0.2254 0.42 7pks:k, 8rbz:k
5 7ev5:A 209 132 0.1092 0.1866 0.2955 0.42
6 7ycx:K 590 71 0.0448 0.0271 0.2254 0.43 7cun:K, 8r22:C, 8r23:C, 8r2d:C, 8rc4:k, 8uib:K
7 3a4y:A 431 25 0.0336 0.0278 0.4800 0.80 3a4y:B, 3a4y:C, 3a4y:D, 2dkf:A, 2dkf:B, 2dkf:C, 2dkf:D, 3idz:A, 3idz:B, 3idz:C, 3idz:D, 3ie0:A, 3ie0:B, 3ie0:C, 3ie0:D, 3ie1:A, 3ie1:B, 3ie1:C, 3ie1:D, 3ie2:A, 3ie2:B, 3ie2:C, 3ie2:D, 3iek:A, 3iek:B, 3iek:C, 3iek:D, 3iel:A, 3iel:B, 3iel:C, 3iel:D, 3iem:A, 3iem:B, 3iem:D, 3iem:C
8 3v00:C 353 119 0.0840 0.0850 0.2521 1.2 1fqj:A, 1fqj:D, 1fqk:A, 1fqk:C, 1got:A, 7jsn:E, 7jsn:F, 1tad:A, 1tad:B, 1tad:C, 1tag:A, 1tnd:A, 1tnd:B, 1tnd:C, 3v00:B, 3v00:A
9 4dnr:A 1031 74 0.0504 0.0175 0.2432 1.7 3k0i:A, 7kf6:A, 7kf6:B, 7kf6:C, 7kf7:B, 7kf8:B, 7kf8:C, 3t53:A
10 2i7t:A 404 25 0.0336 0.0297 0.4800 1.9
11 2i7v:A 433 25 0.0336 0.0277 0.4800 1.9 8t1q:A, 8t1r:A
12 7yjm:B 471 62 0.0392 0.0297 0.2258 2.0 7yjk:B, 7yjk:F, 7yjn:B, 7yjo:B
13 6v4x:H 499 25 0.0336 0.0240 0.4800 2.0 6m8q:A, 6m8q:B
14 7sn8:K 588 27 0.0308 0.0187 0.4074 2.2 8uic:K
15 8bmw:N 251 94 0.0756 0.1076 0.2872 2.3
16 8gyg:B 305 143 0.1064 0.1246 0.2657 3.7 8gyg:A
17 7w1y:F 643 84 0.0616 0.0342 0.2619 4.0 7w1y:7
18 6q55:A 461 25 0.0336 0.0260 0.4800 4.0 6q5a:A
19 3tzw:A 467 63 0.0560 0.0428 0.3175 5.0 3tzx:B, 3tzx:A, 3tzy:B, 3tzy:A, 3tzz:B, 3tzz:A
20 2vfr:A 418 59 0.0476 0.0407 0.2881 5.3 2vfs:A, 2vft:A, 2vfu:A, 2vfv:A
21 6x6x:A 417 117 0.0756 0.0647 0.2308 6.8 2wn6:A, 2wn7:A, 6x6r:A, 6x6r:B, 6x6v:A, 6x6v:B, 6x6v:C, 6x6v:D, 6x6x:B
22 5ikf:A 150 37 0.0336 0.0800 0.3243 7.5
23 4ad9:A 288 34 0.0364 0.0451 0.3824 7.6 4ad9:B, 4ad9:C, 4ad9:D, 4ad9:E, 4ad9:F
24 4xww:A 545 183 0.1064 0.0697 0.2077 7.8 4xwt:A, 4xwt:B, 4xww:B
25 1xcj:A 229 54 0.0448 0.0699 0.2963 7.9 1khh:A, 1khh:B, 1p1b:A, 1p1b:B, 1p1b:C, 1p1b:D, 1p1c:A, 1p1c:B, 1xcl:A
26 2y6p:B 233 85 0.0644 0.0987 0.2706 8.0 2y6p:A, 2y6p:C
27 4le6:A 257 50 0.0448 0.0623 0.3200 9.3 4le6:B, 4le6:C, 4le6:D, 4le6:E
28 6v4x:I 510 96 0.0700 0.0490 0.2604 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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