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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SFDRPFEAARPDGENPSAHETLAEGGRLRPEATYTIPARQGRAIRMAQGEALMVINRDGSQIGDFWAFVEGDCGEYLSME
HLRPTLRRVSPRPGDVLVSNRRRPILTLLEDSSPGVHDTLVASCDVHRYAQLGHEGYHDNCTDNLRMALGALGLRPTTVP
CPLNLWMNTPVVEGGAMEWRPPVSRRGDHVLFRAELDVVVVISCCPMDLLPINGEEAQPRALDVRLRPRPA

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3oru:A 231 230 0.9957 0.9957 1.0000 1.69e-170 3siy:A, 3siy:B, 3siy:C, 3siy:D
2 3di4:A 281 195 0.2294 0.1886 0.2718 1.19e-08 3di4:B
3 7f05:C 355 105 0.1169 0.0761 0.2571 0.91 7f05:B, 7f05:A, 7f05:D
4 8jze:a 670 34 0.0606 0.0209 0.4118 1.9 8jzf:a
5 6z96:A 155 30 0.0606 0.0903 0.4667 2.0 6z92:A, 6z92:B, 6z93:A, 6z93:B, 6z94:A, 6z94:B, 6z96:B, 6zw9:A, 6zw9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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