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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SFDGMFTYGMTHELNEKIMGGRITKIHQPYKHDVIFHIRAKGKNQKLLLSAHPSYSRVHITAQAYENPSEPPMFCMLLRK
HIEGGFIEKIEQAGLDRIMIFHIKSRNEIGDETVRKLYVEIMGRHSNIILTDAAENVIIDGLKHLSPSMNSYRTVLPGQD
YKLPPAQDKISPLEASEDDILRHLSFQEGRLDKQIVDHFSGVSPLFAKEAVHRAGLANKVTLPKALLALFAEVKEHRFIP
NITTVNGKEYFYLLELTHLKGEARRFDSLSELLDRFYFGKAERDRVKQQAQDLERFVVNERKKNANKIKKLEKTLEYSEN
AKEFQLYGELLTANLYMLKKGDKQAEVINYYDEESPTITIPLNPNKTPSENAQAYFTKYQKAKNSVAVVEEQIRLAQEEI
EYFDQLIQQLSSASPRDISEIREELVEGKYLRP

The query sequence (length=433) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aqc:R 558 433 1.0000 0.7760 1.0000 0.0 7aqd:R, 7as8:0, 7as9:0, 7asa:0, 7ope:0
2 8s1u:H 518 430 0.9192 0.7683 0.9256 0.0
3 3j92:u 130 120 0.0808 0.2692 0.2917 1.50e-06
4 3mpb:B 227 83 0.0577 0.1101 0.3012 0.034 3kmh:A, 3kmh:B, 3mpb:A
5 8aaf:a 848 92 0.0485 0.0248 0.2283 0.37 8agt:a, 8agu:a, 8agv:a, 8agw:a, 8agx:a, 8agz:a
6 7ajt:JA 812 110 0.0624 0.0333 0.2455 1.9 7d63:RL, 6ke6:RL, 6lqp:RL, 6lqq:RL, 6lqr:RL, 6lqu:RL, 6lqv:RL, 7suk:LX, 6zqb:JA, 6zqc:JA
7 1vrg:A 515 111 0.0785 0.0660 0.3063 2.1 1vrg:B, 1vrg:C, 1vrg:D, 1vrg:E, 1vrg:F
8 3qp6:A 258 85 0.0485 0.0814 0.2471 2.8 3qp8:A, 3qp8:B, 3qp8:C, 3qp8:D
9 1u63:A 214 119 0.0693 0.1402 0.2521 2.9 1i2a:A, 1u63:C
10 6dru:A 718 43 0.0346 0.0209 0.3488 3.5 6dru:B
11 6xoi:B 403 100 0.0624 0.0670 0.2700 5.3
12 1i8q:A 814 39 0.0346 0.0184 0.3846 5.5 1lxm:A
13 1ojn:A 722 23 0.0277 0.0166 0.5217 5.9 2brp:A, 2brw:A, 2brw:B, 1c82:A, 1egu:A, 1f9g:A, 1loh:A, 1lxk:A, 1n7q:A, 1n7r:A, 1ojm:A, 1ojo:A, 1ojp:A, 1w3y:A
14 5z43:A 292 58 0.0393 0.0582 0.2931 6.3 5z43:B, 5z44:A, 5z44:B, 5z45:A, 5z45:B, 5z46:A, 5z46:B
15 4psw:A 316 91 0.0624 0.0854 0.2967 7.7 1bob:A, 4psx:A, 4psx:D, 7xay:A
16 7ukh:I 181 55 0.0346 0.0829 0.2727 10.0 7ukh:J, 7ukh:K, 7ukh:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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