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BioLiP
>protein
SFATRTSLAADLAALGLAWGDAIMVHAAVSRVGRLLDGPDTIIAALRDTVGPGGTVLAYADWEARYEDLVDDAGRVPPEW
REHVPPFDPQRSRAIRDNGVLPEFLRTTPGTLRSGNPGASLVALGAKAEWFTADHPLDYGYGEGSPLAKLVEAGGKVLML
GAPLDTLTLLHHAEHLADIPGKRIKRIEVPFATPTGTQWRMIEEFDTGDPIVAGLAEDYFAGIVTEFLASGQGRQGLIGA
APSVLVDAAAITAFGVTWLEKRFGT

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6mb6:A 268 265 1.0000 0.9888 1.0000 0.0 6mb4:B, 6mb5:A, 6mb6:C, 6mb7:A, 6mb9:A, 6mb9:B, 6mb9:D, 6mb9:C
2 5ht0:C 261 259 0.6189 0.6284 0.6332 3.65e-110 5ht0:A, 5ht0:B, 5ht0:D, 5ht0:E, 5ht0:F, 7kes:A, 7kes:B, 6mn0:A, 6mn0:B, 6mn0:C, 6mn0:F, 6mn0:D, 6mn0:E, 6mn1:A, 6mn1:B, 6mn2:A, 6mn2:B
3 7q1d:D 272 266 0.4642 0.4522 0.4624 7.01e-71 7mqk:A, 7mqk:B, 7mqk:C, 7mqk:D, 7mql:A, 7mql:B, 7mql:C, 7mql:D, 7mqm:A, 7mqm:B, 7mqm:C, 7mqm:D, 7q0q:A, 7q0q:B, 7q10:A, 7q1d:A, 7q1d:B, 7q1d:C, 7q1x:A
4 6bc2:A 268 264 0.3698 0.3657 0.3712 5.44e-46 6bbz:A, 6bc3:A, 6bc4:A, 6bc5:A, 6bc7:A, 6np2:A, 6np3:A, 6np4:A, 6np5:A, 6nti:A, 6ntj:A, 6o5u:A
5 3sma:B 268 267 0.3358 0.3321 0.3333 2.62e-33 3sma:A, 3sma:C, 3sma:D
6 2nyg:A 270 264 0.3019 0.2963 0.3030 3.00e-29 2nyg:B, 2nyg:C, 2nyg:D, 2nyg:E
7 3kzl:A 266 268 0.2906 0.2895 0.2873 8.64e-23 3ijw:A, 3ijw:B, 3kzl:D, 3kzl:C, 3kzl:B, 3n0m:A, 3n0m:B, 3n0s:A, 3n0s:D, 3n0s:C, 3n0s:B, 3slb:A, 3slb:D, 3slb:C, 3slb:B, 3slf:A, 3slf:B
8 6mn5:D 260 177 0.2302 0.2346 0.3446 4.99e-14 6mn3:A, 6mn3:B, 6mn4:A, 6mn4:B, 6mn4:C, 6mn4:D, 6mn4:E, 6mn4:F, 6mn5:A, 6mn5:B, 6mn5:C, 6mn5:E, 6mn5:F
9 2h1n:A 566 74 0.0755 0.0353 0.2703 2.1 2h1j:A, 2h1j:B, 2h1n:B
10 2dy1:A 660 43 0.0642 0.0258 0.3953 3.1 1wdt:A
11 7wzg:B 243 70 0.0830 0.0905 0.3143 3.2 7wzg:A, 7wzg:C, 7wzg:D, 7wzg:E, 7wzg:F
12 1zmr:A 386 161 0.1774 0.1218 0.2919 3.5
13 3ahm:A 564 98 0.0868 0.0408 0.2347 4.0 3ahm:B, 3ahn:A, 3ahn:B, 3aho:A, 3aho:B
14 5xxb:a 49 18 0.0340 0.1837 0.5000 6.1
15 3wy1:A 535 48 0.0566 0.0280 0.3125 6.5 3wy1:B, 3wy2:A, 3wy2:B, 3wy3:A, 3wy3:B, 3wy4:A
16 3wy4:B 421 48 0.0566 0.0356 0.3125 6.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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