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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SEVPQVVSLDPTSIPIEYNTPIHDIKVQVYDIKGGCNVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKF
NVKLGTSKHFYMFNDNKNSVAVGYVGCGSVADLSEADMKRVVLSLVTMLHDNKLSKLTVVFEINVDKNLFRFFLETLFYE
YMTDERFKSEYIKHLGVYINNADTYKEEVEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLNLEYKILGVKE
LEELKMGAYLSVGKGSMYPNKFIHLTYKSKGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYC
VGTLKPENVEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYAEKLGVDYIVDIATLTGAML
YSLGTSYAGVFGNNEELINKILQSSKTSNEPVWWLPIINEYRATLNSKYADINQISSSVKASSIVASLFLKEFVQNTAWA
HIDIAGVSWNFKARKPKGFGVRLLTEFVLN

The query sequence (length=510) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ez4:C 525 517 1.0000 0.9714 0.9865 0.0 5cbm:A, 5cbm:B, 5cbm:C, 5cbm:D, 5cbm:E, 5cbm:F, 5cbm:G, 5cbm:H, 5cbm:I, 5cbm:J, 5cbm:K, 5cbm:L, 6ee2:A, 6ee2:B, 6ee2:C, 6ee2:D, 6ee2:E, 6ee2:F, 6ee2:G, 6ee2:H, 6ee2:I, 6ee2:J, 6ee2:K, 6ee2:L, 6eee:A, 6eee:B, 6eee:C, 6eee:D, 6eee:E, 6eee:F, 6eee:G, 6eee:H, 6eee:I, 6eee:J, 6eee:K, 6eee:L, 8ez4:A, 8ez4:B, 8ez4:D, 8ez4:E, 8ez4:F, 8ez4:G, 8ez4:H, 8ez4:I, 8ez4:J, 8ez4:K, 8ez4:L, 4k3n:A, 4k3n:B, 4k3n:C, 4k3n:D, 4k3n:E, 4k3n:F, 4k3n:G, 4k3n:H, 4k3n:I, 4k3n:J, 4k3n:K, 4k3n:L, 3kqx:A, 3kqx:B, 3kqx:C, 3kqx:D, 3kqx:E, 3kqx:F, 3kqx:G, 3kqx:H, 3kqx:I, 3kqx:J, 3kqx:K, 3kqx:L, 3kqz:A, 3kqz:B, 3kqz:C, 3kqz:D, 3kqz:E, 3kqz:F, 3kqz:G, 3kqz:H, 3kqz:I, 3kqz:J, 3kqz:K, 3kqz:L, 3kr4:A, 3kr4:B, 3kr4:C, 3kr4:D, 3kr4:E, 3kr4:F, 3kr4:G, 3kr4:H, 3kr4:I, 3kr4:J, 3kr4:K, 3kr4:L, 3kr5:A, 3kr5:B, 3kr5:C, 3kr5:D, 3kr5:E, 3kr5:F, 3kr5:G, 3kr5:H, 3kr5:I, 3kr5:J, 3kr5:K, 3kr5:L, 4r6t:A, 4r6t:B, 4r6t:C, 4r6t:D, 4r6t:E, 4r6t:F, 4r6t:G, 4r6t:H, 4r6t:I, 4r6t:J, 4r6t:K, 4r6t:L, 4r76:A, 4r76:B, 4r76:C, 4r76:D, 4r76:E, 4r76:F, 4r76:G, 4r76:H, 4r76:I, 4r76:J, 4r76:K, 4r76:L, 4r7m:A, 4r7m:B, 4r7m:C, 4r7m:D, 4r7m:E, 4r7m:F, 4r7m:G, 4r7m:H, 4r7m:I, 4r7m:J, 4r7m:K, 4r7m:L, 7rie:A, 7rie:B, 7rie:C, 7rie:D, 7rie:E, 7rie:F, 7rie:G, 7rie:H, 7rie:I, 7rie:J, 7rie:K, 7rie:L, 7srv:A, 7srv:B, 7srv:C, 7srv:D, 7srv:E, 7srv:F, 8svm:A, 8svm:B, 8svm:C, 8svm:D, 8svm:E, 8svm:F, 8svm:G, 8svm:H, 8svm:I, 8svm:J, 8svm:K, 8svm:L, 8sw9:A, 8sw9:B, 8sw9:C, 8sw9:D, 8sw9:E, 8sw9:F, 8sw9:G, 8sw9:H, 8sw9:I, 8sw9:J, 8sw9:K, 8sw9:L, 7t3v:A, 7t3v:B, 7t3v:C, 7t3v:D, 7t3v:E, 7t3v:F, 3t8w:A, 3t8w:B, 3t8w:E, 3t8w:C, 3t8w:D, 3t8w:F, 3t8w:G, 3t8w:H, 3t8w:K, 3t8w:I, 3t8w:J, 3t8w:L, 4x2t:A, 4x2t:B, 4x2t:C, 4x2t:D, 4x2t:E, 4x2t:F, 4x2t:G, 4x2t:H, 4x2t:I, 4x2t:J, 4x2t:K, 4x2t:L, 4zx8:A, 4zx8:B, 4zx8:C, 4zx8:D, 4zx8:E, 4zx8:F, 4zx8:G, 4zx8:H, 4zx8:I, 4zx8:J, 4zx8:K, 4zx8:L, 4zx9:A, 4zx9:B, 4zx9:C, 4zx9:D, 4zx9:E, 4zx9:F, 4zx9:G, 4zx9:H, 4zx9:I, 4zx9:J, 4zx9:K, 4zx9:L, 4zy0:A, 4zy0:B, 4zy0:C, 4zy0:D, 4zy0:E, 4zy0:F, 4zy0:G, 4zy0:H, 4zy0:I, 4zy0:J, 4zy0:K, 4zy0:L, 4zy1:A, 4zy1:B, 4zy1:C, 4zy1:D, 4zy1:E, 4zy1:F, 4zy1:G, 4zy1:H, 4zy1:I, 4zy1:J, 4zy1:K, 4zy1:L, 4zy2:A, 4zy2:B, 4zy2:C, 4zy2:D, 4zy2:E, 4zy2:F, 4zy2:G, 4zy2:H, 4zy2:I, 4zy2:J, 4zy2:K, 4zy2:L, 4zyq:A, 4zyq:B, 4zyq:C, 4zyq:D, 4zyq:E, 4zyq:F, 4zyq:G, 4zyq:H, 4zyq:I, 4zyq:J, 4zyq:K, 4zyq:L
2 7k5k:A 545 544 0.7706 0.7211 0.7224 0.0 7k5k:B, 7k5k:C, 7k5k:D, 7k5k:E, 7k5k:F, 6wvv:A, 6wvv:B, 6wvv:C, 6wvv:D, 6wvv:E
3 6wvv:F 497 513 0.7529 0.7726 0.7485 0.0 6wvv:G, 6wvv:H, 6wvv:I, 6wvv:J, 6wvv:L
4 6wvv:K 440 510 0.7137 0.8273 0.7137 0.0
5 4ksi:A 517 358 0.3059 0.3017 0.4358 9.60e-80 5d8n:A, 5d8n:B, 5d8n:C
6 3h8f:A 497 372 0.2882 0.2958 0.3952 4.84e-78 3h8f:B, 3h8f:C, 3h8f:D, 3h8f:E, 3h8f:F, 3h8g:F, 3h8g:A, 3h8g:B, 3h8g:C, 3h8g:D, 3h8g:E
7 7y1s:A 494 397 0.2843 0.2935 0.3652 2.08e-74
8 8pz0:A 500 370 0.2882 0.2940 0.3973 4.09e-74 8pzm:A, 8pzy:A, 8pzy:B, 8pzy:C, 8pzy:D, 8pzy:E, 8pzy:F
9 1gyt:A 503 470 0.3137 0.3181 0.3404 2.25e-71 1gyt:B, 1gyt:C, 1gyt:D, 1gyt:E, 1gyt:F, 1gyt:G, 1gyt:H, 1gyt:I, 1gyt:J, 1gyt:K, 1gyt:L
10 3jru:B 490 316 0.2608 0.2714 0.4209 8.81e-70 3jru:A
11 8d1x:D 469 327 0.2549 0.2772 0.3976 6.04e-66 8d1x:A, 8d1x:B, 8d1x:C, 8d1x:E, 8d1x:F
12 2ewb:A 486 335 0.2510 0.2634 0.3821 3.10e-64 1bll:E, 1bpm:A, 1bpn:A, 2j9a:A, 1lam:A, 1lan:A, 1lap:A, 1lcp:A, 1lcp:B
13 6ome:A 499 445 0.2922 0.2986 0.3348 7.50e-63
14 4zla:A 485 366 0.2843 0.2990 0.3962 6.06e-61 4zi6:A, 4zi6:B, 4zi6:C, 4zi6:D, 4zi6:E, 4zi6:F, 4zla:B, 4zla:C, 4zla:D, 4zla:E, 4zla:F
15 6ov8:A 429 323 0.2255 0.2681 0.3560 1.75e-51 6oad:A, 6oad:B, 6oad:C, 6oad:D, 6oad:E, 6oad:F, 6oad:G, 6oad:H, 6oad:I, 6oad:J, 6oad:K, 6oad:L, 6ov8:B, 6ov8:C, 6ov8:D, 6ov8:E, 6ov8:F
16 5ntg:A 512 322 0.2216 0.2207 0.3509 3.01e-48 5ntg:B
17 5lhk:A 455 320 0.2235 0.2505 0.3563 1.38e-44
18 5ntd:G 520 319 0.2078 0.2038 0.3323 1.92e-40 4efd:F, 5nsm:A, 5nsm:B, 5nsm:C, 5nsm:D, 5nsm:E, 5nsm:F, 5nsm:G, 5nsm:H, 5nsm:I, 5nsm:J, 5nsm:K, 5nsm:L, 5nsq:A, 5nsq:B, 5nsq:C, 5nsq:D, 5nsq:E, 5nsq:F, 5ntd:A, 5ntd:B, 5ntd:D, 5ntd:C, 5ntd:E, 5ntd:F, 5ntd:H, 5ntd:I, 5ntd:J, 5ntd:K, 5ntd:L
19 2hc9:A 489 292 0.1922 0.2004 0.3356 1.53e-34
20 5nth:A 537 325 0.1902 0.1806 0.2985 1.57e-31
21 1y7i:B 262 108 0.0588 0.1145 0.2778 0.12 1xkl:A, 1xkl:B, 1xkl:C, 1xkl:D, 1y7i:A
22 7eor:A 745 81 0.0451 0.0309 0.2840 1.4 7eor:C, 7yfi:B
23 6vvg:A 267 55 0.0373 0.0712 0.3455 1.8 6vvg:B
24 3vo2:A 296 44 0.0333 0.0574 0.3864 2.0 3vo1:A, 3vo1:B, 3vo2:B
25 4oxi:A 526 26 0.0235 0.0228 0.4615 2.7
26 8xku:C 921 47 0.0294 0.0163 0.3191 5.0 8xkv:C
27 8pjb:A 962 82 0.0392 0.0208 0.2439 5.1 8b9g:A, 8b9k:A, 8pjj:A
28 5aor:A 1009 82 0.0392 0.0198 0.2439 5.4 5aor:B, 8b9i:A, 8b9j:A
29 5xn9:A 138 89 0.0471 0.1739 0.2697 6.7 5xn9:B, 5xna:A, 5xna:B
30 7qep:D4 127 64 0.0392 0.1575 0.3125 7.0
31 7eoq:A 783 82 0.0451 0.0294 0.2805 7.2 7eoq:C, 7eou:A, 7eou:C, 7eu7:B, 7eu7:D, 5tpw:B, 5tq2:B
32 6org:A 450 73 0.0431 0.0489 0.3014 8.6 6or4:A, 6or4:B, 6orf:A, 6orf:B, 6org:B, 6orh:A, 6orh:B
33 5u8c:B 283 80 0.0431 0.0777 0.2750 9.3 2a5s:A, 2a5t:B, 5dex:B, 5h8f:A, 5h8h:A, 5h8n:A, 5h8q:A, 5i2k:A, 5i2n:A, 5i56:B, 5i57:B, 5i58:B, 5i59:B, 5jty:B, 4jwx:A, 5kcj:A, 5kdt:A, 4nf4:B, 4nf5:B, 4nf6:B, 4nf8:B, 6odl:A, 6odl:B, 6ovd:B, 6ove:B, 5tp9:A, 5tpa:A, 6usu:B, 6usv:B, 6uz6:B, 6uzg:B, 6uzr:B, 6uzw:B, 6uzx:B, 5vih:B, 5vii:B, 5vij:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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