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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPS
ESDSGVYCCRIEVPGWFNDVKINVRLNLQRALV

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5f7h:B 113 113 1.0000 1.0000 1.0000 5.27e-82 5f7h:A, 5f7h:C, 5f7h:D, 5f7h:E, 5f7h:F
2 3bib:X 109 108 0.6106 0.6330 0.6389 6.78e-46
3 3kaa:B 109 102 0.4071 0.4220 0.4510 8.64e-27
4 7m3y:B 109 110 0.3982 0.4128 0.4091 2.15e-23 6dhb:A, 7m3z:A, 7m41:A, 7m41:B
5 4jkw:A 119 109 0.2478 0.2353 0.2569 3.99e-05 4k55:A
6 3mj9:A 229 76 0.2035 0.1004 0.3026 0.012
7 6wfy:H 228 96 0.2566 0.1272 0.3021 0.014
8 2zg3:A 210 86 0.2301 0.1238 0.3023 0.12 2zg1:A
9 8jow:A 227 89 0.2212 0.1101 0.2809 0.13 8jow:C
10 2n7b:A 145 97 0.2212 0.1724 0.2577 0.35 7qui:B, 7qui:A
11 6cdp:A 221 93 0.2301 0.1176 0.2796 0.41 6cdm:A, 6cdm:D, 5tkj:A, 5tkj:D, 5tkj:G, 5tkj:J
12 6ldx:H 214 83 0.2212 0.1168 0.3012 0.50 6ldv:H
13 1xed:A 111 89 0.2124 0.2162 0.2697 0.55 1xed:B
14 5j06:B 215 62 0.1416 0.0744 0.2581 0.72 7aw6:A, 7aw6:B, 6d49:A, 6d49:B, 6d4a:A, 6d4a:B, 5j06:D, 5j0b:A, 5j0b:B, 5j0b:C
15 1ao7:D 115 90 0.2301 0.2261 0.2889 1.2 5e9d:D, 5e9d:I
16 4mng:E 228 89 0.2655 0.1316 0.3371 1.5 4mng:F
17 6ldw:H 198 92 0.2212 0.1263 0.2717 1.7 6ldw:B
18 2iep:A 187 16 0.0885 0.0535 0.6250 2.2 2iep:B
19 6xds:A 485 88 0.1593 0.0371 0.2045 2.3 6b8o:B, 6b8o:E, 6b8o:C, 6b8o:F, 6b8o:A, 6b8o:D
20 1bfv:H 119 85 0.2035 0.1933 0.2706 2.3 2bfv:H, 1cfv:H
21 5uhw:A 342 28 0.1239 0.0409 0.5000 2.6 5uhw:B, 5uhz:A, 5uhz:B, 5ui9:A, 5ui9:B, 5uia:A, 5uia:B, 5uib:A, 5uib:B
22 5k6w:A 475 22 0.0885 0.0211 0.4545 2.8 5k6v:A, 5k6w:B
23 5viy:H 223 88 0.2124 0.1076 0.2727 2.9 5viy:J
24 8vig:A 436 68 0.1681 0.0436 0.2794 3.0
25 6rpb:S 189 91 0.2389 0.1429 0.2967 3.1 6rpb:N
26 6iaa:A 815 81 0.2124 0.0294 0.2963 3.8 6iaa:B
27 5v6m:H 213 79 0.2035 0.1080 0.2911 7.2
28 4jfx:L 214 99 0.2389 0.1262 0.2727 7.8 4jfz:L, 4jg0:L, 4jg1:L
29 8qxc:L 214 125 0.3097 0.1636 0.2800 8.1 1axs:L, 1axs:A, 1d6v:L, 8qxc:B, 6xli:B, 6xli:D, 6xli:L, 6xtg:L, 6xuk:L
30 5iqj:A 131 31 0.0885 0.0763 0.3226 9.1 5iqj:C
31 5t8u:B 336 72 0.1858 0.0625 0.2917 9.2 5t8u:A
32 1bih:A 391 50 0.1416 0.0409 0.3200 9.3 1bih:B
33 7ow1:K 214 82 0.2212 0.1168 0.3049 10.0 7oxn:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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