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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SESLTGTLDAPFPEYQTLPADPMSVLHNWLERARRVGIREPRALALATADSQGRPSTRIVVISEISDAGVVFSTHAGSQK
GRELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNAARQLAELQGP
LPRPEGYCVFELRLESLEFWGNGQERLHERLRYDRSDTGWNVRRLQP

The query sequence (length=207) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4hmt:B 207 207 1.0000 1.0000 1.0000 1.07e-153 4hms:A, 4hms:B, 4hmt:A, 4hmu:A, 4hmu:B, 4hmv:A, 4hmv:B, 1ty9:A, 1ty9:B
2 1t9m:A 204 204 0.7198 0.7304 0.7304 1.87e-109 1t9m:B
3 4hmw:B 205 205 0.4831 0.4878 0.4878 3.80e-66 4hmw:A, 4hmx:A, 4hmx:B
4 1jnw:A 214 192 0.2995 0.2897 0.3229 4.96e-34 1dnl:A, 1g76:A, 1g77:A, 1g78:A, 1g79:A, 6ylz:AAA, 6ymh:BBB
5 1nrg:A 213 178 0.2705 0.2629 0.3146 1.67e-25 6h00:A, 3hy8:A, 8qyt:A, 8qyw:A
6 1wv4:A 162 190 0.2512 0.3210 0.2737 7.38e-24 1wv4:B, 6ymh:AAA
7 1ci0:A 205 201 0.2415 0.2439 0.2488 1.13e-13 1ci0:B
8 2i51:A 194 68 0.1063 0.1134 0.3235 0.015 2i51:B
9 9fgp:A 140 60 0.0821 0.1214 0.2833 1.1 9fgp:B
10 6z7n:B 847 80 0.1063 0.0260 0.2750 2.5
11 3lpp:B 869 44 0.0773 0.0184 0.3636 3.8 3lpp:D
12 7q9f:A 1009 61 0.0918 0.0188 0.3115 4.0 7akd:C, 7l56:B, 7l56:C, 7l56:A, 7q9f:B
13 7jr9:D 339 48 0.0725 0.0442 0.3125 5.7
14 5ue8:A 847 18 0.0435 0.0106 0.5000 9.2 5ue8:B, 1y8f:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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