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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPKSRKFNGKKELLKEKYLDSIKI
YRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNY

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b9v:D 194 115 1.0000 0.5928 1.0000 1.54e-84 5gmk:F, 5lj3:D, 5lj5:D
2 6j6q:F 161 115 1.0000 0.7143 1.0000 1.35e-83
3 6zym:u 157 115 0.4522 0.3312 0.4522 5.48e-31
4 8i0w:Y 204 115 0.4522 0.2549 0.4522 1.20e-30 5yzg:Y
5 8evx:B 305 56 0.1478 0.0557 0.3036 0.12
6 8evw:B 326 56 0.1478 0.0521 0.3036 0.13 8evw:A, 8evx:A
7 7vem:A 347 47 0.1391 0.0461 0.3404 2.3 7vem:B
8 7xg9:A 286 52 0.1043 0.0420 0.2308 4.3 7xg9:B, 7xlf:A, 7xlf:B
9 7sfz:A 100 60 0.1304 0.1500 0.2500 8.3 7sfz:B, 7sfz:C, 7sfz:D, 7sfz:E, 7sfz:F, 7sfz:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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