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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGE
KKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAH
FGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHL
FVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKI
GDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFAD
VHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFN

The query sequence (length=469) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3per:A 477 469 1.0000 0.9832 1.0000 0.0 3per:B, 3pf7:A, 3pf7:B, 3pm5:A, 3pm5:B, 3pm5:C, 3pm5:D, 3q1g:A, 3q1g:B, 3q1g:C, 3q1g:D
2 5zcr:A 725 39 0.0341 0.0221 0.4103 0.46 5zcr:B
3 4aqi:A 96 56 0.0341 0.1667 0.2857 0.71 4aqj:A, 2psr:A, 3psr:A, 3psr:B, 2wnd:A, 2wor:A, 2wos:A
4 2zsm:A 425 50 0.0384 0.0424 0.3600 1.3 2epj:A, 2zsl:A, 2zsm:B, 2zsm:C
5 3juv:A 448 70 0.0490 0.0513 0.3286 3.7 3jus:B, 3jus:A, 3ld6:B, 3ld6:A, 6q2t:A, 6q2t:B, 8sbi:A, 8sbi:B, 8ss0:A, 8ss0:B, 6uez:A, 6uez:B, 4uhi:A, 4uhi:B, 4uhi:C, 4uhi:D, 4uhl:A, 4uhl:F, 4uhl:B, 4uhl:C, 4uhl:D, 4uhl:E, 4uhl:G, 4uhl:H
6 7qrd:C 364 66 0.0426 0.0549 0.3030 5.2 6arj:A, 6arj:B, 6arj:C, 6arj:D, 6arv:A, 6arv:B, 6arv:C, 6arv:D, 3b3f:A, 3b3f:B, 3b3f:C, 3b3f:D, 6d2l:A, 6d2l:B, 6d2l:C, 6d2l:D, 6d2l:E, 6d2l:F, 6dvr:A, 6dvr:B, 5dwq:B, 5dwq:D, 5dwq:A, 5dwq:C, 5dx0:A, 5dx0:B, 5dx0:C, 5dx0:D, 5dx1:A, 5dx1:B, 5dx1:C, 5dx1:D, 5dx8:A, 5dx8:B, 5dx8:C, 5dx8:D, 5dxa:A, 5dxa:B, 5dxa:D, 5dxa:C, 5dxj:A, 5dxj:B, 5dxj:C, 5dxj:D, 7fai:A, 7fai:B, 7fai:C, 7fai:D, 7faj:A, 7faj:B, 7faj:C, 7faj:D, 8g2h:A, 8g2i:A, 5ih3:A, 5ih3:B, 5ih3:C, 5ih3:D, 4ikp:A, 4ikp:B, 4ikp:C, 4ikp:D, 5is6:A, 5is6:B, 5is6:C, 5is6:D, 5is7:A, 5is7:B, 5is7:C, 5is7:D, 5is8:A, 5is8:B, 5is8:D, 5is8:C, 5is9:A, 5is9:B, 5is9:C, 5is9:D, 5isa:C, 5isa:D, 5isa:A, 5isa:B, 5isb:A, 5isb:B, 5isb:C, 5isb:D, 5isc:A, 5isc:B, 5isc:C, 5isc:D, 5isd:A, 5isd:B, 5isd:C, 5isd:D, 5ise:A, 5ise:B, 5ise:C, 5ise:D, 5isf:A, 5isf:B, 5isf:C, 5isf:D, 5isg:A, 5isg:B, 5isg:C, 5isg:D, 5ish:A, 5ish:B, 5ish:C, 5ish:D, 5isi:A, 5isi:B, 5isi:C, 5isi:D, 6izq:A, 5k8v:A, 5k8v:B, 5k8v:C, 5k8v:D, 5k8w:A, 5k8w:B, 5k8w:C, 5k8w:D, 5k8x:A, 5k8x:B, 5k8x:C, 5k8x:D, 5lgp:A, 5lgp:B, 5lgp:C, 5lgp:D, 5lgq:B, 5lgq:A, 5lgq:C, 5lgq:D, 5lgr:A, 5lgr:B, 5lgr:C, 5lgr:D, 5lgs:A, 5lgs:B, 5lgs:C, 5lgs:D, 5lkj:A, 5lkj:B, 5lkj:C, 5lkj:D, 5lv2:A, 5lv2:B, 5lv2:C, 5lv2:D, 5lv2:E, 5lv2:F, 5lv2:G, 5lv2:H, 5lv3:A, 5lv3:B, 5lv3:C, 5lv3:D, 5ntc:A, 5ntc:B, 5ntc:C, 5ntc:D, 7okp:A, 7okp:B, 7okp:C, 7okp:D, 7os4:A, 7os4:B, 7os4:C, 7os4:D, 7ppq:A, 7ppq:B, 7ppq:C, 7ppq:D, 7ppy:A, 7ppy:B, 7ppy:C, 7ppy:D, 7pu8:A, 7pu8:B, 7pu8:C, 7pu8:D, 7puc:A, 7puc:B, 7puc:C, 7puc:D, 7puq:A, 7puq:B, 7puq:C, 7puq:D, 7pv6:A, 7pv6:B, 7pv6:C, 7pv6:D, 7qph:A, 7qph:D, 7qph:C, 7qph:B, 7qrd:A, 7qrd:B, 7qrd:D, 6s70:A, 6s70:B, 6s70:C, 6s70:D, 6s71:A, 6s71:B, 6s71:C, 6s71:D, 6s74:A, 6s74:B, 6s74:C, 6s74:D, 6s77:A, 6s77:B, 6s77:C, 6s77:D, 6s79:A, 6s79:B, 6s79:C, 6s79:D, 6s7a:A, 6s7a:B, 6s7a:C, 6s7a:D, 6s7b:A, 6s7b:B, 6s7b:C, 6s7b:D, 6s7c:A, 6s7c:B, 6s7c:C, 6s7c:D, 8sig:A, 8sih:A, 5tbh:A, 5tbh:B, 5tbh:C, 5tbh:D, 5tbi:A, 5tbi:B, 5tbi:C, 5tbi:D, 5tbj:A, 5tbj:B, 5tbj:C, 5tbj:D, 5u4x:A, 5u4x:B, 5u4x:C, 5u4x:D, 7u9i:A, 7u9i:B, 2v74:B, 2v74:D, 2v74:F, 2v74:H, 2y1w:A, 2y1w:B, 2y1w:C, 2y1w:D, 2y1x:A, 2y1x:D, 2y1x:B, 2y1x:C
7 5hsa:A 662 39 0.0341 0.0242 0.4103 5.5 5hsa:B, 5hsa:C, 5hsa:D, 5hsa:E, 5hsa:F, 5hsa:G, 5hsa:H, 5i68:A
8 6t0f:A 431 176 0.0746 0.0812 0.1989 5.5 6t0f:B, 6t0f:C, 6t0f:D, 6t0g:A, 6t0h:A, 6t0j:A, 6t0k:A, 6t0l:A, 2wm4:A, 2wm5:A, 7zb9:A
9 2wt0:A 300 71 0.0512 0.0800 0.3380 5.6 2wsv:A, 2wt1:A, 2wt2:A, 2wt2:B
10 7e7l:A 770 41 0.0320 0.0195 0.3659 5.8 7e7l:B
11 8dtu:A 113 43 0.0362 0.1504 0.3953 6.0
12 8dtn:A 117 23 0.0235 0.0940 0.4783 7.6 8dtn:C, 8dtn:G
13 4avn:A 420 96 0.0554 0.0619 0.2708 9.0 4avo:A, 4b4f:A, 4b4f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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