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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLP
FSTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKL
NLQKLGVAATSAPMHD

The query sequence (length=176) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3nj1:A 182 175 0.9830 0.9505 0.9886 5.98e-129 5jnn:A, 3kaz:B, 3kb0:A, 3kb3:A, 3kdi:A, 4la7:A, 4lg5:A, 4lga:A, 4lgb:A, 7mwn:A, 3nj0:A, 3nj0:B, 3nj0:C, 3nmh:A, 3nmh:B, 3nmh:C, 3nmp:A, 3nmp:B, 3nmp:C, 3nmt:A, 3nmv:A, 3nr4:A, 3nr4:B, 3nr4:C, 3ns2:A, 3ns2:B, 3ns2:C, 3ujl:A, 5vr7:A, 5vro:A, 5vs5:A, 5vsq:A, 5vsr:A, 5vt7:A
2 3oji:B 185 177 0.6080 0.5784 0.6045 4.68e-71 4ds8:A, 4dsb:A, 4dsb:B, 4dsc:A, 4dsc:B, 4jda:A, 4jda:B, 4jda:C, 4jda:D, 5jo1:A, 5jo2:A, 3oji:A
3 5ujv:A 192 171 0.5284 0.4844 0.5439 1.10e-66 5ujv:B, 5ujv:C
4 4oic:A 182 169 0.5966 0.5769 0.6213 1.59e-66
5 3k3k:B 183 169 0.5284 0.5082 0.5503 3.01e-65 8ey0:A, 3k90:A, 3k90:D, 3njo:A, 3njo:B, 3njo:C, 5or2:A, 5or6:A, 3qn1:A, 5ur4:A, 5ur5:A, 5ur6:A, 3wg8:A, 4wvo:A, 5ygv:A, 5ygv:B, 3zvu:A
6 5mob:A 193 168 0.5398 0.4922 0.5655 4.52e-65 7z1q:A, 7z1r:D000, 7z1s:A
7 8ay6:A 190 167 0.5227 0.4842 0.5509 2.59e-61 7avw:A, 8ay3:A, 8ay7:A, 8ay8:A, 8ay9:A, 8aya:A, 5mmx:B, 5mmx:A, 5mn0:A, 6zuc:A
8 3nef:A 182 163 0.5057 0.4890 0.5460 2.48e-53 9j6i:B, 3jrq:B, 3jrs:A, 3jrs:B, 3jrs:C, 3kdj:A, 3neg:A, 3neg:B, 3nmn:A, 3nmn:C
9 3w9r:A 171 157 0.4148 0.4269 0.4650 6.60e-51 3oqu:A, 3oqu:B
10 5gwo:D 167 158 0.4261 0.4491 0.4747 5.27e-49 5gwo:C, 5gwp:C, 5gwp:D, 5zcg:C, 5zcg:D, 5zch:C, 5zch:D, 5zcl:C, 5zcl:D, 5zcu:C, 5zcu:D
11 7mlc:A 156 146 0.3807 0.4295 0.4589 1.47e-44 7mld:A, 6nwb:A, 6nwc:A, 3r6p:A
12 4c94:A 161 75 0.1080 0.1180 0.2533 5.85e-04 4c94:B, 4c94:C, 4c94:D, 4c94:E
13 1txc:A 157 74 0.0966 0.1083 0.2297 0.048 1txc:B
14 5i8f:A 164 54 0.0795 0.0854 0.2593 0.064 4n3e:A, 4n3e:B, 4n3e:Z, 4n3e:b, 4n3e:C, 4n3e:D, 4n3e:E, 4n3e:F, 4n3e:G, 4n3e:H, 4n3e:I, 4n3e:J, 4n3e:K, 4n3e:L, 4n3e:P, 4n3e:M, 4n3e:N, 4n3e:O, 4n3e:Q, 4n3e:S, 4n3e:R, 4n3e:U, 4n3e:V, 4n3e:W, 4n3e:X, 4n3e:Y, 4n3e:a, 6sjj:B, 6sjj:j, 6sjj:A, 6sjj:R, 6sjj:Q, 6sjj:P, 6sjj:O, 6sjj:N, 6sjj:M, 6sjj:L, 6sjj:K, 6sjj:J, 6sjj:I, 6sjj:a, 6sjj:Y, 6sjj:H, 6sjj:G, 6sjj:F, 6sjj:D, 6sjj:f, 6sjj:E, 6sjj:C, 6sjj:e, 6sjj:d, 6sjj:c, 6sjj:b, 6sjj:Z, 6sjj:X, 6sjj:W, 6sjj:V, 6sjj:U, 6sjj:T, 6sjj:S, 6sjj:i, 6sjj:h, 6sjj:g
15 7x7i:A 583 88 0.1250 0.0377 0.2500 0.25 7x7i:B, 7x7j:A, 7x7j:B, 7x7k:A, 7x7k:B
16 2vq5:A 173 94 0.1307 0.1329 0.2447 0.29 5non:A, 5non:B, 5non:C, 6rp3:A, 2vq5:B, 6z82:A
17 4gu3:A 205 39 0.0739 0.0634 0.3333 0.32 4gu3:B, 4gu3:C, 4gu4:A, 4gu4:B, 4gu4:C, 4xc5:A, 4xc5:B, 4xc5:C
18 2qim:A 157 51 0.0625 0.0701 0.2157 0.44 3e85:A, 5mxb:A, 5mxw:A
19 6awr:A 156 51 0.0682 0.0769 0.2353 0.45 6awr:B, 6aws:A, 6aws:C, 6awt:A, 6awt:B, 6awt:C, 6awt:D, 6awu:A, 6awu:B, 6awu:C, 6awu:D, 6awv:A, 6awv:B, 6awv:C, 6aww:B, 6aww:E, 6aww:D, 6aww:C, 6ax0:A, 6ax0:B, 6b1d:A, 6b1d:C, 4ma6:A
20 2flh:B 153 76 0.1136 0.1307 0.2632 0.52 3c0v:A, 3c0v:B, 3c0v:C, 3c0v:D, 2flh:A, 2flh:C, 2flh:D, 4psb:A
21 4a80:A 159 88 0.1250 0.1384 0.2500 0.96 4a81:A, 4a83:A, 4a84:A, 4a85:A, 4a86:A, 4a87:A, 4a8g:A, 4a8v:A, 1fm4:A, 4mns:A, 4qip:A
22 4ryv:A 155 85 0.0795 0.0903 0.1647 1.6
23 8c6j:S 635 31 0.0682 0.0189 0.3871 3.5 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
24 8q1b:E 182 56 0.0966 0.0934 0.3036 4.6 8q1b:P
25 2lko:A 138 19 0.0511 0.0652 0.4737 7.1
26 3fkq:A 354 39 0.0795 0.0395 0.3590 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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