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BioLiP
>protein
SEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFG
PYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELL
VWYGDEYGQELGIKWGSKWKKELMA

The query sequence (length=185) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ijd:A 215 184 0.9946 0.8558 1.0000 9.78e-140 4ijd:B, 6nm4:A, 6nm4:B
2 4c1q:A 173 170 0.8270 0.8844 0.9000 8.80e-117 4c1q:B
3 3ray:A 159 165 0.3892 0.4528 0.4364 6.03e-47
4 2l9z:A 39 28 0.0541 0.2564 0.3571 0.066
5 6xlp:A 586 59 0.0973 0.0307 0.3051 0.57
6 1e3e:A 376 50 0.0865 0.0426 0.3200 1.9 1e3e:B, 1e3i:A, 1e3i:B, 1e3l:A, 1e3l:B
7 6pz0:A 185 63 0.1027 0.1027 0.3016 4.5 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
8 3lpp:B 869 54 0.0919 0.0196 0.3148 5.7 3lpp:D
9 7prj:A 55 18 0.0486 0.1636 0.5000 6.3
10 8pjn:b 296 73 0.1081 0.0676 0.2740 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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