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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL
DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHN
RAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLS
SAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELA
EEKETAFEFLSSA

The query sequence (length=333) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4mdh:A 333 333 1.0000 1.0000 1.0000 0.0 4mdh:B, 5mdh:A, 5mdh:B, 7rm9:A
2 5nue:B 332 330 0.6126 0.6145 0.6182 3.88e-141 5nue:A, 5nue:C, 5nuf:A, 5nuf:B, 5nuf:C
3 4uup:A 335 333 0.5766 0.5731 0.5766 1.72e-124 4uup:B
4 1bdm:B 327 322 0.5375 0.5474 0.5559 4.46e-120 1bdm:A, 1bmd:A, 1bmd:B, 2cvq:A, 2cvq:B, 1wze:A, 1wze:B, 1wzi:A, 1wzi:B, 1y7t:A, 1y7t:B
5 5kvv:A 327 330 0.5225 0.5321 0.5273 6.18e-112 5kvv:B
6 1b8u:A 327 331 0.4985 0.5076 0.5015 1.36e-106 1b8v:A
7 4i1i:A 320 324 0.4655 0.4844 0.4784 2.33e-91
8 1civ:A 374 323 0.4535 0.4037 0.4675 1.37e-89
9 7mdh:B 360 323 0.4474 0.4139 0.4613 6.47e-89 7mdh:A, 7mdh:C, 7mdh:D
10 6itk:A 318 326 0.4444 0.4654 0.4540 7.53e-88 6itk:B
11 4uun:B 337 333 0.4324 0.4273 0.4324 7.75e-87 5a1t:A, 5a1t:B, 4uun:A
12 1hyg:A 313 301 0.2523 0.2684 0.2791 9.15e-12 1hye:A, 1hyg:B
13 6r8g:C 312 303 0.2342 0.2500 0.2574 2.36e-10 6r8g:A, 6r8g:B, 6r8g:D, 6y91:A, 6y91:B, 6y91:C, 6y91:D
14 1guz:A 305 227 0.1892 0.2066 0.2775 4.47e-10 1guz:B, 1guz:C, 1guz:D
15 1a5z:A 312 215 0.1832 0.1955 0.2837 5.99e-09
16 1llc:A 320 317 0.2372 0.2469 0.2492 8.17e-09 6j9t:B, 6j9t:D, 6j9t:E, 6j9t:C, 6j9t:F, 6j9u:A, 6j9u:C, 6j9u:D
17 3gvh:A 318 124 0.1051 0.1101 0.2823 3.00e-08 3gvh:B, 3gvh:C, 3gvh:D, 3gvi:A, 3gvi:B, 3gvi:C, 3gvi:D, 3gvi:E, 3gvi:F
18 4plt:B 319 182 0.1562 0.1630 0.2857 2.38e-07 4plh:A, 4plh:B, 4plh:C, 4plh:D, 4plt:A, 4plt:C, 4plt:D, 4plv:A, 4plv:B, 4plv:C, 4plv:D, 4plw:A, 4plw:B, 4plw:C, 4plw:D, 4ply:B, 4ply:A, 4ply:C, 4ply:D, 4ply:F, 4ply:E, 4ply:G, 4ply:H
19 7dbj:A 333 274 0.1982 0.1982 0.2409 4.37e-07 6cep:A, 6cep:B, 6cep:C, 6cep:D, 7dbj:B, 7dbj:C, 7dbj:D, 7dbk:A, 7dbk:B, 7dbk:C, 7dbk:D, 7dbk:E, 7dbk:F, 7dbk:G, 7dbk:H, 1i0z:A, 1i0z:B, 5ldh:A, 5ldh:B, 8qde:A, 8qde:B, 8qde:C, 8qde:D, 1t2f:A, 1t2f:B, 1t2f:C, 1t2f:D, 5yta:A, 5yta:B
20 4ros:A 318 131 0.1081 0.1132 0.2748 4.59e-07 5ujk:A
21 1uxg:A 308 161 0.1471 0.1591 0.3043 6.29e-07 1guy:A, 1guy:C, 1ur5:A, 1ur5:C, 1uxg:B, 1uxh:A, 1uxh:B, 1uxi:A, 1uxi:B, 1uxj:A, 1uxj:C, 1uxk:A, 1uxk:C
22 5zi2:A 339 296 0.2162 0.2124 0.2432 9.74e-07 5zi2:B, 5zi4:A, 5zi4:B
23 1v6a:A 332 181 0.1562 0.1566 0.2873 1.23e-06 1v6a:B
24 2hjr:B 314 187 0.1502 0.1592 0.2674 1.07e-05 2hjr:A, 2hjr:C, 2hjr:D, 2hjr:E, 2hjr:F, 2hjr:G, 2hjr:H, 2hjr:I, 2hjr:J, 2hjr:K, 2hjr:L
25 7f8d:A 313 120 0.0991 0.1054 0.2750 3.22e-05 7by9:A, 7by9:B, 7by9:C, 7by9:D, 7bya:A, 7bya:B, 7bya:C, 7bya:D, 7f8d:B, 7f8d:C, 7f8d:D, 7x1l:A, 7x1l:B, 7x1l:E, 7x1l:F, 7x1l:C, 7x1l:D
26 6ct6:B 331 162 0.1411 0.1420 0.2901 4.88e-05 6ct6:A
27 1emd:A 312 192 0.1532 0.1635 0.2656 5.13e-05 1ib6:A, 1ib6:C, 1ib6:D, 1ie3:A, 1ie3:B, 1ie3:C, 1ie3:D, 5kka:A, 5kka:B
28 2fn7:A 317 186 0.1471 0.1546 0.2634 7.92e-05 2fn7:B, 4nd1:A, 4nd1:B, 4nd2:A, 4nd2:B, 4nd3:A, 4nd3:B, 4nd4:A, 4nd4:B
29 4ln1:B 321 126 0.0991 0.1028 0.2619 9.66e-05 4ln1:A, 4ln1:C, 4ln1:D
30 4qsm:A 332 303 0.2162 0.2169 0.2376 1.58e-04 4aj1:A, 4aj1:B, 4aj1:C, 4aj1:D, 4aj2:A, 4aj2:B, 4aj2:C, 4aj2:D, 4aj4:A, 4aj4:B, 4aj4:C, 4aj4:D, 4aje:A, 4aje:B, 4aje:C, 4aje:D, 4ajh:A, 4ajh:B, 4ajh:C, 4ajh:D, 4aji:A, 4aji:B, 4aji:C, 4aji:D, 4ajj:A, 4ajj:B, 4ajj:C, 4ajj:D, 4ajk:A, 4ajk:B, 4ajk:C, 4ajk:D, 4ajl:A, 4ajl:B, 4ajl:C, 4ajl:D, 4ajn:A, 4ajn:B, 4ajn:C, 4ajn:D, 4ajo:A, 4ajo:B, 4ajo:C, 4ajo:D, 4ajp:A, 4ajp:B, 4ajp:C, 4ajp:D, 4al4:A, 4al4:B, 4al4:C, 4al4:D, 6bad:A, 6bad:B, 6bad:C, 6bad:D, 6bag:A, 6bag:B, 6bag:C, 6bag:D, 6bax:A, 6bax:B, 6bax:C, 6bax:D, 6baz:A, 6baz:B, 6baz:C, 6baz:D, 6bb0:A, 6bb0:B, 6bb0:C, 6bb0:D, 6bb1:A, 6bb1:B, 6bb1:C, 6bb1:D, 6bb1:E, 6bb1:F, 6bb1:G, 6bb1:H, 6bb2:A, 6bb2:B, 6bb2:C, 6bb2:D, 6bb2:E, 6bb2:F, 6bb2:G, 6bb2:H, 6bb3:A, 6bb3:B, 6bb3:C, 6bb3:D, 9bk2:A, 9bk2:D, 9bk3:D, 8fw6:A, 8fw6:B, 3h3f:A, 3h3f:B, 3h3f:C, 3h3f:D, 3h3f:E, 3h3f:F, 3h3f:G, 3h3f:H, 1i10:A, 1i10:B, 1i10:C, 1i10:D, 1i10:E, 1i10:F, 1i10:G, 1i10:H, 4i8x:A, 4i8x:B, 4i8x:C, 4i8x:D, 4i8x:E, 4i8x:F, 4i8x:G, 4i8x:H, 4i9h:A, 4i9h:B, 4i9h:C, 4i9h:D, 4i9h:E, 4i9h:F, 4i9h:G, 4i9h:H, 4i9n:A, 4i9n:B, 4i9n:C, 4i9n:D, 4i9n:E, 4i9n:F, 4i9n:G, 4i9n:H, 4i9u:A, 4i9u:B, 4i9u:C, 4i9u:D, 4i9u:E, 4i9u:F, 4i9u:G, 4i9u:H, 5ixs:A, 5ixs:B, 5ixs:C, 5ixs:D, 5ixy:A, 5ixy:B, 5ixy:C, 5ixy:D, 4jnk:A, 4jnk:B, 4jnk:C, 4jnk:D, 5kkc:A, 5kkc:B, 5kkc:C, 5kkc:D, 4l4s:H, 4l4s:A, 9ldb:A, 9ldb:B, 9ldt:A, 9ldt:B, 7m2n:A, 7m2n:B, 7m2n:C, 7m2n:D, 4m49:A, 4m49:B, 4m49:C, 4m49:D, 6mv8:A, 6mv8:B, 6mv8:C, 6mv8:D, 6mva:A, 6mva:B, 6mva:C, 6mva:D, 5nqq:A, 5nqq:B, 5nqq:C, 5nqq:D, 4okn:A, 4okn:B, 4okn:C, 4okn:D, 4okn:E, 4okn:F, 4okn:G, 4okn:H, 6p6u:C, 6p6u:E, 6q0d:A, 6q0d:B, 6q0d:C, 6q0d:D, 6q0d:E, 6q0d:F, 6q13:A, 6q13:B, 6q13:C, 6q13:D, 4qo7:A, 4qo7:B, 4qo7:C, 4qo7:D, 4qo8:A, 4qo8:B, 4qo8:C, 4qo8:D, 4qsm:B, 4qsm:C, 4qsm:D, 4qsm:E, 4qsm:F, 4qsm:G, 4qsm:H, 4qt0:A, 4qt0:B, 4qt0:C, 4qt0:D, 4qt0:E, 4qt0:F, 4qt0:G, 4qt0:H, 4r68:A, 4r68:B, 4r68:C, 4r68:D, 4r69:A, 4r69:B, 4r69:C, 4r69:D, 4rls:A, 4rls:B, 4rls:C, 4rls:D, 6sbu:A, 6sbu:B, 6sbu:C, 6sbu:D, 6sbu:E, 6sbu:F, 6sbu:G, 6sbu:H, 6sbv:A, 6sbv:B, 6sbv:C, 6sbv:D, 6sbv:E, 6sbv:F, 6sbv:G, 6sbv:H, 5w8h:A, 5w8h:B, 5w8h:C, 5w8i:A, 5w8i:C, 5w8i:D, 5w8j:A, 5w8j:B, 5w8j:C, 5w8j:D, 5w8k:A, 5w8k:B, 5w8k:C, 5w8k:D, 5w8l:A, 5w8l:B, 5w8l:C, 5w8l:D, 5zjd:A, 5zjd:B, 5zjd:C, 5zjd:D, 5zjd:E, 5zjd:F, 5zjd:G, 5zjd:H, 5zjf:A, 5zjf:C, 4zvv:A, 4zvv:B, 4zvv:C, 4zvv:D
31 3om9:A 329 133 0.1171 0.1185 0.2932 2.70e-04 3om9:B, 3om9:C, 3om9:D, 1pzf:A, 1pzf:B, 1pzf:C, 1pzf:D, 1pzg:A, 1pzg:B, 1pzg:C, 1pzg:D, 1pzh:A, 1pzh:B, 1pzh:C, 1pzh:D
32 2x0i:A 294 248 0.1772 0.2007 0.2379 4.42e-04 2x0j:A
33 8ab3:A 330 294 0.1982 0.2000 0.2245 0.002 8ab3:B, 8ab3:C, 8ab3:D
34 4plf:B 330 129 0.1111 0.1121 0.2868 0.003 4plc:A, 4plc:B, 4plc:C, 4plc:D, 4plf:A, 4plg:A, 4plg:B, 6vdj:A
35 3h3j:B 314 311 0.2252 0.2389 0.2412 0.007 3d4p:A, 3d4p:B, 3h3j:A
36 6k13:A 332 194 0.1471 0.1476 0.2526 0.007 6k13:B
37 3pqd:B 312 240 0.1772 0.1891 0.2458 0.008 3pqd:A, 3pqd:C, 3pqd:D, 3pqd:F, 3pqd:H, 3pqd:E, 3pqd:G, 3pqf:C, 3pqf:D
38 1d3a:A 303 242 0.1441 0.1584 0.1983 0.009 1d3a:B, 1hlp:A, 1hlp:B, 2hlp:A, 1o6z:A, 1o6z:B, 1o6z:C, 1o6z:D, 2x0r:A, 2x0r:B
39 3jb9:a 255 47 0.0480 0.0627 0.3404 0.010
40 3czm:B 323 127 0.1111 0.1146 0.2913 0.022 3czm:A, 1sow:A, 1sow:B
41 3wsw:A 316 202 0.1502 0.1582 0.2475 0.054 3wsw:B, 3wsw:C, 3wsw:D
42 1ez4:B 318 251 0.1742 0.1824 0.2311 0.15 1ez4:A, 1ez4:C, 1ez4:D
43 1ldn:A 316 189 0.1291 0.1361 0.2275 0.34 1ldn:C, 1ldn:B, 1ldn:D, 1ldn:E, 1ldn:F, 1ldn:H, 1ldn:G, 2ldb:A, 2ldb:B, 2ldb:C, 2ldb:D
44 6ihd:B 304 138 0.1051 0.1151 0.2536 0.52 6ihd:A, 6ihe:A, 6ihe:B
45 4k2h:D 186 56 0.0480 0.0860 0.2857 0.92 4k2h:A, 4k2h:B, 4k2h:C, 4k2h:E, 4k2h:F, 4k2h:G, 4k2h:H, 4k2h:I, 4k2h:J, 4k2h:K, 4k2h:L, 4k2h:M, 4k2h:N
46 6ts2:D 1123 45 0.0420 0.0125 0.3111 1.3 6ts2:A, 6ts2:B, 6ts2:C
47 7qoz:A 323 46 0.0480 0.0495 0.3478 1.3 7qoz:B, 7qoz:C, 7qoz:D, 7qoz:E, 7qoz:F, 7qoz:G, 7qoz:H
48 7a5f:o3 94 30 0.0330 0.1170 0.3667 5.2 7a5g:o3, 7a5h:o, 7a5i:o3, 7a5j:o, 7a5k:o3, 8any:o, 6i9r:o, 3j7y:o, 3j9m:o, 8k2a:L6, 8k2b:L6, 7l08:o, 7l20:o, 6nu2:o, 6nu3:o, 7o9k:o, 7o9m:o, 7odr:o, 7ods:o, 7odt:o, 7of0:o, 7of2:o, 7of3:o, 7of4:o, 7of5:o, 7of6:o, 7of7:o, 7og4:o, 7oi6:o, 7oi7:o, 7oi8:o, 7oi9:o, 7oia:o, 7oib:o, 7oic:o, 7oid:o, 7oie:o, 8oir:Be, 8oit:Be, 5ool:o, 5oom:o, 7pd3:o, 8pk0:o, 7po4:o, 7qh6:o, 7qh7:o, 7qi4:o, 7qi5:o, 7qi6:o, 8qsj:o, 8qu5:o, 6vlz:o, 6vmi:o, 8xt0:L6, 8xt1:L6, 8xt2:L6, 8xt3:L6, 6zm5:o, 6zm6:o, 6zs9:o, 6zsa:o, 6zsb:o, 6zsc:o, 6zsd:o, 6zse:o, 6zsg:o
49 5t79:A 315 31 0.0390 0.0413 0.4194 6.1 3erp:A, 3erp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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