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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTELKAIHGMMDASEKTNYTCCRLQRHEWNKH
GWCNWYNIEPWILLMNKTQANLTEGQPLRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGILVQGPCNFEI

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4dw4:B 163 160 1.0000 0.9816 1.0000 8.83e-122 4dvl:A, 4dvl:B, 4dvn:B, 4dvn:A, 4dw3:A, 4dw3:B, 4dw4:A, 4dw5:A, 4dw5:B, 4dw7:A, 4dw7:B, 4dwa:A, 4dwa:B, 4dwc:A
2 1t5j:A 301 38 0.0813 0.0432 0.3421 0.73
3 3d3z:A 238 71 0.1125 0.0756 0.2535 3.3
4 2ea1:A 245 70 0.1000 0.0653 0.2286 3.4 2pqx:A, 2pqy:A, 2z70:A
5 4za2:D 247 39 0.0938 0.0607 0.3846 3.5
6 1v9h:A 193 63 0.1000 0.0829 0.2540 4.1 1j1f:A, 1j1g:A, 1uca:A, 1ucc:A, 1ucd:A
7 6cnh:A 321 33 0.0688 0.0343 0.3333 4.9
8 1vcz:A 204 112 0.1750 0.1373 0.2500 6.1 1vd1:A, 1vd3:A
9 1yb1:B 242 30 0.0813 0.0537 0.4333 6.9
10 1g8x:A 1009 60 0.1313 0.0208 0.3500 8.5 1g8x:B
11 1jwy:A 1039 60 0.1313 0.0202 0.3500 8.5 4ae3:A, 2aka:A, 7b19:A, 7b1a:A, 3bz7:A, 3bz8:A, 3bz9:A, 1d0x:A, 1d0y:A, 1d0z:A, 1d1a:A, 1d1b:A, 1d1c:A, 1fmw:A, 2jhr:A, 2jj9:A, 1jx2:A, 1lvk:A, 3mjx:A, 3mkd:A, 1mma:A, 1mmd:A, 1mmg:A, 1mmn:A, 1mne:A, 3mnq:A, 3myh:X, 3myk:X, 3myl:X, 4pjk:A, 1vom:A, 1w9i:A, 1w9j:A, 1w9k:A, 1w9l:A, 2x9h:A, 2xel:A, 2xo8:A, 2y8i:X, 1yv3:A, 6z2s:A, 6z7t:A, 6z7t:B, 6z7u:A
12 3wmw:B 278 81 0.1375 0.0791 0.2716 9.3 3wmw:A
13 6xyw:Aq 106 55 0.1000 0.1509 0.2909 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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