Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SELSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGDHMGMLAT
VINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKA
TKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQGR

The query sequence (length=238) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ek5:A 241 238 1.0000 0.9876 1.0000 3.72e-173 3ek5:B, 3ek5:C, 3ek5:F, 3ek5:E, 3ek5:D
2 2bne:B 238 231 0.5546 0.5546 0.5714 1.06e-91 2bnd:A, 2bnd:B, 2bne:A, 2bnf:A, 2bnf:B, 2v4y:A, 2v4y:E, 2v4y:F, 2v4y:B, 2v4y:D, 2v4y:C
3 4a7x:C 234 226 0.5168 0.5256 0.5442 7.68e-77 4a7w:A, 4a7w:B, 4a7x:B, 4a7x:D, 4a7x:E
4 3nwy:B 231 231 0.4664 0.4805 0.4805 1.55e-69 7bes:A, 7bes:B, 7bes:C, 7bix:A, 7bix:C, 7bix:B, 7bix:E, 7bix:D, 7bix:G, 7bix:I, 7bix:H, 7bix:K, 7bix:J, 7bl7:B, 7bl7:A, 7bl7:C, 7bl7:F, 7bl7:D, 7bl7:E, 7bl7:I, 7bl7:K, 7bl7:J, 7bl7:H, 7bl7:L, 7bl7:G, 3nwy:A, 3nwy:D, 3nwy:C, 3nwy:E, 3nwy:F
5 2jjx:A 244 234 0.4370 0.4262 0.4444 2.69e-65 2jjx:B, 2jjx:C
6 2va1:B 235 231 0.3697 0.3745 0.3810 7.36e-46 2va1:A, 2va1:C, 2va1:D, 2va1:E, 2va1:F
7 2bmu:B 226 241 0.2815 0.2965 0.2780 1.80e-12 2bmu:A, 2bri:A, 2bri:B, 2ji5:A, 2ji5:B
8 2j4j:F 226 241 0.2479 0.2611 0.2448 8.94e-07 2j4j:A, 2j4j:E, 2j4j:B, 2j4j:D, 2j4j:C, 2j4k:A, 2j4k:B, 2j4k:D, 2j4k:E, 2j4k:F, 2j4l:A, 2j4l:B, 2j4l:C, 2j4l:D, 2j4l:E, 2j4l:F, 2j4l:G, 2j4l:I, 2j4l:J, 2j4l:K, 2j4l:L
9 5yei:C 397 229 0.2563 0.1537 0.2664 1.22e-05 5yei:D, 5yei:B, 5yei:A, 5yei:F, 5yei:E, 5yei:H, 5yei:G
10 2j4k:C 206 231 0.2311 0.2670 0.2381 1.40e-05 2j4l:H
11 6yt3:B 376 103 0.1134 0.0718 0.2621 3.69e-04 4f6t:B, 6gu5:B, 6guj:B, 6gx4:B, 6h6w:B, 6h73:B, 6h74:B, 6h8b:B, 6h8h:B, 4ndo:B, 4ndp:B, 4ndq:B, 4ndr:B, 5o5w:B, 6ris:B, 6rj4:B, 6rj4:D, 6rj4:F, 6rkd:B, 6rkd:F, 6rkd:D, 6rkd:H, 6rkd:J, 6rkd:L, 6rke:B, 6rke:D, 6rke:F, 6rke:H, 6rke:J, 6rke:L, 7z5j:B, 7z5j:D, 7z5j:F, 7z5j:H, 7z5j:J, 7z5j:L, 7zqq:B, 7zr4:B, 7zse:B
12 7wx3:B 258 189 0.2017 0.1860 0.2540 0.002 7wx3:A, 7wx3:C, 7wx3:D, 7wx4:A
13 2ako:A 241 89 0.1050 0.1037 0.2809 0.003 2ako:B, 2ako:C, 2ako:D
14 3ab4:A 370 205 0.2101 0.1351 0.2439 0.016 3ab4:C, 3ab4:E, 3ab4:G, 3ab4:I, 3ab4:O
15 3aaw:C 392 220 0.2311 0.1403 0.2500 0.017 3aaw:A, 3aaw:B, 3aaw:D, 3ab2:A, 3ab2:B, 3ab2:C, 3ab2:D, 3ab2:E, 3ab2:F, 3ab2:G, 3ab2:H, 3ab2:I, 3ab2:J, 3ab2:K, 3ab2:L, 3ab2:M, 3ab2:N, 3ab2:O, 3ab2:P, 3ab4:B, 3ab4:D, 3ab4:F, 3ab4:H, 3ab4:J, 3ab4:K, 3ab4:L, 3ab4:M, 3ab4:N, 3ab4:P, 2dtj:A, 2dtj:B
16 7f5x:A 236 176 0.1807 0.1822 0.2443 0.022 7f5x:B, 7f5x:C, 7f5x:D
17 2cdq:A 470 90 0.1134 0.0574 0.3000 0.023 2cdq:B
18 3c1m:C 468 118 0.1345 0.0684 0.2712 0.036 3c1m:A, 3c1m:B, 3c1m:D, 3c1n:A, 3c1n:B, 3c1n:C, 3c1n:D, 3c20:A, 3c20:B, 2hmf:A, 2hmf:B, 2hmf:C, 2hmf:D
19 3ll9:B 249 17 0.0504 0.0482 0.7059 0.26 3ll9:A
20 3lkk:B 238 25 0.0546 0.0546 0.5200 0.31 3lkk:A, 3ll5:A, 3ll5:B, 3ll5:C, 3ll5:D
21 2j5t:D 365 112 0.1429 0.0932 0.3036 0.34 2j5t:A, 2j5t:B, 2j5t:C, 2j5t:E, 2j5t:F, 2j5t:G
22 2j0w:A 447 62 0.0798 0.0425 0.3065 0.59 2j0x:A, 2j0x:B
23 3l76:A 585 169 0.1933 0.0786 0.2722 1.6 3l76:B
24 2zsg:A 356 40 0.0630 0.0421 0.3750 3.7
25 6rke:A 272 110 0.1387 0.1213 0.3000 6.7 4f6t:A, 6gu5:A, 6guj:A, 6gwb:A, 6gwv:A, 6gwv:P, 6gx4:A, 6h6w:A, 6h73:A, 6h74:A, 6h8b:A, 6h8h:A, 4ndo:A, 4ndp:A, 4ndq:A, 4ndr:A, 5o5w:A, 2ogx:A, 6ris:A, 6rj4:A, 6rj4:C, 6rj4:E, 6rkd:A, 6rkd:C, 6rkd:E, 6rkd:G, 6rkd:I, 6rkd:K, 6rke:C, 6rke:E, 6rke:G, 6rke:I, 6rke:K, 6yt3:A, 7z5j:A, 7z5j:C, 7z5j:E, 7z5j:I, 7z5j:G, 7z5j:K, 7zqq:A, 7zr4:A, 7zse:A
26 5g3r:A 335 50 0.0798 0.0567 0.3800 7.4 5g3r:B, 5g5k:A, 5g5k:B, 5g6t:A, 5g6t:B, 5ly7:A, 5ly7:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218