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BioLiP
>protein
SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL
LSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRIC
AFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRVKEFKQSLIKYMETQRSYTA

The query sequence (length=224) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2xto:A 224 224 1.0000 1.0000 1.0000 5.50e-171 2xtm:A, 2xtm:B, 2xtn:A, 2xto:B
2 6z3e:A 237 205 0.4777 0.4515 0.5220 9.03e-72
3 3v70:A 217 204 0.4509 0.4654 0.4951 1.96e-69 3v70:B
4 3zjc:E 286 199 0.3661 0.2867 0.4121 5.87e-59 3zjc:A, 3zjc:B, 3zjc:C, 3zjc:D
5 3zjc:F 252 199 0.3616 0.3214 0.4070 2.44e-53
6 3lxx:A 169 194 0.3482 0.4615 0.4021 3.03e-44
7 2j3e:A 249 133 0.1652 0.1486 0.2782 0.003 3bb3:A, 3bb4:A, 3def:A
8 1h65:A 257 136 0.1652 0.1440 0.2721 0.005 3bb1:A, 3bb1:B, 3bb1:C, 3bb1:D, 3bb1:E, 3bb1:F, 3bb1:G, 3bb1:H, 1h65:B, 1h65:C
9 5u1o:B 451 63 0.1027 0.0510 0.3651 0.14 5u1o:A, 5u1o:C, 5u1o:D
10 7b93:D 430 85 0.0982 0.0512 0.2588 0.31 7ak5:D, 8c2s:D, 8ca3:D, 8ca5:D, 6g2j:D, 6g72:D, 5gpn:Z, 5gup:C, 8iao:D, 8iap:D, 8ib4:D, 8ib5:D, 8ib9:D, 8iba:D, 8ic2:D, 8ic3:D, 5lc5:D, 5ldw:D, 5ldx:D, 5lnk:4, 8olt:D, 8om1:D, 7psa:D, 8pw5:D1, 8pw6:D1, 8pw7:D1, 8q0a:D, 8q0f:D, 8q0m:D, 8q0o:D, 8q0q:D, 8q1y:D, 8q25:D, 8q45:D, 8q46:D, 8q47:D, 8q48:D, 8q49:D, 8q4a:D, 6qa9:S2, 6qc4:S2, 6qc7:S2, 7qsd:D, 7qsk:D, 7qsl:D, 7qsm:D, 7qso:D, 7r41:D, 7r42:D, 7r43:D, 7r44:D, 7r45:D, 7r46:D, 7r47:D, 7r48:D, 7r4c:D, 7r4d:D, 7r4f:D, 7r4g:D, 8rgp:D, 8rgq:D, 8rgr:D, 8rgt:D, 8ud1:1D, 8uep:1D, 8ueq:1D, 8uer:1D, 8ues:1D, 8uet:1D, 8ueu:1D, 8uev:1D, 8uew:1D, 8uex:1D, 8uey:1D, 8uez:1D, 8ugh:1D, 8ugi:1D, 8ugj:1D, 8ugn:1D, 8ugn:5D, 8ugr:1D, 7v2c:Q, 7v2d:Q, 7v2e:Q, 7v2f:Q, 7v2h:Q, 7v2k:Q, 7v2r:Q, 7v30:Q, 7v31:Q, 7v32:Q, 7v33:Q, 7v3m:Q, 7vb7:Q, 7vbn:Q, 7vbz:Q, 7vwj:Q, 7vxp:Q, 7vxu:Q, 7vy8:Q, 7vya:Q, 7vyf:Q, 7vyh:Q, 7vyn:Q, 7vz1:Q, 7vzv:Q, 7vzw:Q, 7w00:Q, 7w0h:Q, 7w0r:Q, 7w0y:Q, 7w1o:Q, 7w1p:Q, 7w1t:Q, 7w1u:Q, 7w1v:Q, 7w1z:Q, 7w20:Q, 7w2k:Q, 7w2l:Q, 7w2r:Q, 7w2u:Q, 7w2y:Q, 7w31:Q, 7w32:Q, 7w35:Q, 7w4c:Q, 7w4d:Q, 7w4e:Q, 7w4f:Q, 7w4g:Q, 7w4j:Q, 7w4k:Q, 7w4l:Q, 7w4m:Q, 7w4n:Q, 7w4q:Q, 5xtb:Q, 7zd6:4, 7zdh:4, 7zdj:4, 7zdm:4, 7zdp:4, 7zeb:4, 6zkc:4, 6zkd:4, 6zke:4, 6zkf:4, 6zkg:4, 6zkh:4, 6zki:4, 6zkj:4, 6zkk:4, 6zkl:4, 6zkm:4, 6zkn:4, 6zko:4, 6zkp:4, 6zkq:4, 6zkr:4, 6zks:4, 6zkt:4, 6zku:4, 6zr2:D, 6ztq:D
11 6opn:B 124 60 0.0759 0.1371 0.2833 0.59 6opn:E, 6opn:H
12 1wf3:A 296 110 0.1295 0.0980 0.2636 0.72
13 6x5b:B 149 60 0.0759 0.1141 0.2833 0.94 6x5b:E, 6x5b:K, 6x5c:B, 6x5c:G, 6x5c:F
14 7qsn:D 404 82 0.0982 0.0545 0.2683 0.98 6q9d:S2, 6zk9:4, 6zkv:4
15 5cyp:A 248 59 0.0714 0.0645 0.2712 2.2 5cyp:B, 5cyp:C
16 8xaw:B 567 78 0.0982 0.0388 0.2821 2.3 8xaw:C, 8xaw:D, 8xaw:E, 8xaw:A, 8xaw:F, 8xax:A, 8xax:B, 8xax:C, 8xax:D, 8xax:E, 8xax:F, 8xay:B, 8xay:C, 8xay:D, 8xay:E, 8xay:A, 8xay:F
17 8sgd:A 291 140 0.1607 0.1237 0.2571 3.8 8fwp:A, 8pfh:A, 8sgd:C
18 5xr4:B 171 132 0.1384 0.1813 0.2348 3.9 5xr4:A, 5xr6:A, 5xr6:B, 5xr7:A, 5xr7:B
19 6dwo:A 712 46 0.0893 0.0281 0.4348 4.6 6dwo:B, 6dwo:C, 6dwo:D, 7fe1:A, 7fe1:B, 7fe1:C, 7fe1:D, 7fe2:A, 7fe2:B, 7fe2:C, 7fe2:D
20 6mq9:B 267 29 0.0446 0.0375 0.3448 4.9 6mq9:A, 6mq9:D, 6mq9:C, 6mqb:A, 6mqk:A, 6mqk:D, 6mqk:B, 6mqk:C, 6mql:A
21 3j9y:w 639 145 0.1607 0.0563 0.2483 5.3 5kcs:1w
22 3qz1:A 445 42 0.0491 0.0247 0.2619 5.5 3qz1:B, 3qz1:C, 3qz1:D
23 5m7h:A 420 55 0.0670 0.0357 0.2727 5.5 4dcs:A, 4dct:A, 4dcu:A, 2hjg:A, 5mbs:A, 5x4b:A, 5x4b:B
24 8p5d:LC0 327 124 0.1384 0.0948 0.2500 6.1 8p60:LC0, 8p60:KC0, 7qca:LC0
25 8pfh:D 291 27 0.0491 0.0378 0.4074 6.5
26 6yxx:EA 532 59 0.0804 0.0338 0.3051 8.3 7aoi:XL, 6yxy:EA
27 8uua:v 418 68 0.0938 0.0502 0.3088 8.6 8a57:D, 8uu7:v, 8uu8:v, 8uu9:v
28 7nvh:A 717 36 0.0625 0.0195 0.3889 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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