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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SEKYFVKNGQPHFLISGEVHYFRINPKLWRNHLQLLKQTGADTVSTYIPWDWHEIEEDDFDFEGKTHPARNLIRFIKLCK
EENLDLIVKPGPYILAEYENQGLPSWLLKKLSKNAFALDENGNVISPDLVSYLSDEFLEYTFKWYDKVMPIISKHQKEHY
GPITMMQLCNEIGVFQWLSGKSDYNPKVINLYKEFIIQRYKTIEKLNSVYSTNYNSFDDLKAPSGKIKLRSDYCAYFDFH
LFFREYYNKYISILKNKIRSFGINIKLTHNIPGWIYGNASELPMLISTYSEIMKNHPDIIFGLDHIPEFVSFRNAHSDLA
CNKILEAMQPEAPVWAAEFQAGTREHHVKAYAKDLETFYIASLAHGIKGFNYYMFSQGINPEGKGFYGKTFYFQTALDAA
SNKLALYDSIKKVNRFIRKEQKDLLRTNVNSEICVGFYKPYFFTELISSQLLKEKKLNVEELGLYIDPRFLREEILFNGL
LRGLQTLNYNYDVVDLENCDLKSLTAYKQLWITSAEFMDAETQNLLSEFVLNGGNLILYPAVPTLDNYLNRCEILKNNFG
IEFITKDSSHKVSAFGIEDVFTAFSKKQIYNDTNSKPIAFTQENEICGIRKKIGKGELTILGFAFGYTSDEHLELIDKLV
KLNKIKRELFVSDKDIQFVVRENNKSRYIFFLNYHNERKTFNYRKSEEISIAPFSYKVIKENK

The query sequence (length=703) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vl3:A 707 707 1.0000 0.9943 0.9943 0.0 7vkx:A, 7vkx:B, 7vky:A, 7vky:B, 7vkz:A, 7vkz:B, 7vl0:A, 7vl0:B, 7vl1:A, 7vl1:B, 7vl2:A, 7vl2:B, 7vl3:B, 7vl4:A, 7vl4:B, 7vl5:B, 7vl6:A, 7vl6:B, 7vl7:A, 7vl7:B, 7x87:A, 7x87:B
2 5gsm:A 786 731 0.2845 0.2545 0.2736 3.13e-68 5gsm:B
3 3thc:A 605 175 0.0797 0.0926 0.3200 2.49e-21 3thc:B, 3thc:C, 3thc:D, 3thd:A, 3thd:B, 3thd:C, 3thd:D, 3wez:A, 3wez:B, 3wez:C, 3wez:D, 3wf0:A, 3wf0:B, 3wf0:C, 3wf0:D, 3wf1:A, 3wf1:B, 3wf1:C, 3wf1:D, 3wf2:A, 3wf2:B, 3wf2:C, 3wf2:D, 3wf3:A, 3wf3:B, 3wf3:C, 3wf3:D, 3wf4:A, 3wf4:B, 3wf4:C, 3wf4:D
4 4e8c:A 594 171 0.0839 0.0993 0.3450 1.47e-20 4e8c:B
5 6eon:A 754 106 0.0597 0.0557 0.3962 3.61e-20
6 6ik5:A 705 181 0.0725 0.0723 0.2818 1.14e-16 6ik5:B, 6ik6:A, 6ik6:B, 6ik7:B, 6ik7:A, 6ik8:B, 6ik8:A, 3w5f:A, 3w5g:A, 3w5g:B
7 4iug:A 957 171 0.0768 0.0564 0.3158 1.25e-10
8 5ifp:A 968 171 0.0725 0.0527 0.2982 3.74e-10 5ift:A, 5ihr:A, 5juv:A, 5mgc:A, 5mgd:A
9 3og2:A 986 168 0.0711 0.0507 0.2976 4.39e-10 3ogr:A, 3ogs:A, 3ogv:A
10 1tg7:A 971 166 0.0697 0.0505 0.2952 6.87e-10 1xc6:A
11 4uni:A 689 264 0.0925 0.0943 0.2462 2.78e-08 4uni:B, 4uni:C, 4uoz:A, 4uoz:B, 4uoz:C
12 4uzs:A 687 230 0.0669 0.0684 0.2043 4.80e-04 4ucf:A, 4ucf:B, 4ucf:C, 4uzs:B
13 4d1j:D 540 182 0.0541 0.0704 0.2088 0.004 4d1j:A, 4d1j:B, 4d1j:C, 4d1j:E, 4d1j:F, 4d1j:G, 4d1j:H, 5jaw:A, 5jaw:D, 5jaw:B, 5jaw:C, 5jaw:E, 5jaw:F, 5jaw:G, 5jaw:H, 8pej:A, 8pej:B, 8pej:C, 8pej:D, 8pej:E, 8pej:F, 8pej:G, 8pej:H, 6tbf:A, 6tbf:B, 6tbf:C, 6tbf:D, 6tbf:E, 6tbf:F, 6tbf:G, 6tbf:H, 6tbg:A, 6tbg:B, 6tbg:C, 6tbg:D, 6tbg:E, 6tbg:F, 6tbg:G, 6tbg:H, 6tbh:A, 6tbh:C, 6tbh:B, 6tbh:D, 6tbh:E, 6tbh:G, 6tbh:F, 6tbh:H, 6tbi:A, 6tbi:B, 6tbi:C, 6tbi:D, 6tbi:E, 6tbi:F, 6tbi:G, 6tbi:H, 6tbj:A, 6tbj:B, 6tbj:C, 6tbj:D, 6tbj:E, 6tbj:F, 6tbj:G, 6tbj:H, 6tbk:A, 6tbk:B, 6tbk:C, 6tbk:D, 6tbk:E, 6tbk:F, 6tbk:G, 6tbk:H
14 8ibt:A 694 226 0.0669 0.0677 0.2080 0.13 8ibs:A, 8ibs:B, 8ibs:C, 8ibs:D, 8ibs:E, 8ibs:F, 8ibt:B
15 5dfa:A 685 198 0.0640 0.0657 0.2273 0.41 5dfa:B, 5dfa:C, 4oif:A, 4oif:B, 4oif:C
16 1x46:A 150 131 0.0413 0.1933 0.2214 0.55
17 1kwg:A 644 95 0.0299 0.0326 0.2211 0.87 1kwk:A
18 1bf6:A 291 72 0.0284 0.0687 0.2778 0.95 1bf6:B, 4lef:C, 4lef:D, 4lef:A, 4lef:B, 4lef:E, 4lef:F, 4lef:G, 4lef:H
19 2uw1:B 338 34 0.0199 0.0414 0.4118 1.2 2uw1:A
20 5k1r:B 440 88 0.0256 0.0409 0.2045 1.3 5k1r:A
21 7z8s:E 1514 51 0.0256 0.0119 0.3529 1.4 7zb5:E, 7zb5:H
22 7z7n:E 1306 51 0.0256 0.0138 0.3529 1.4
23 7zke:E 1623 51 0.0256 0.0111 0.3529 1.4
24 3iup:A 376 45 0.0228 0.0426 0.3556 1.5 3iup:B
25 4ry9:A 297 54 0.0256 0.0606 0.3333 1.6 4ry9:B
26 3tts:A 675 256 0.0697 0.0726 0.1914 1.8 3tts:B, 3tts:C, 3tts:D, 3tts:E, 3tts:F, 3tty:A, 3tty:B, 3tty:C, 3tty:D, 3tty:E, 3tty:F
27 1t84:A 107 46 0.0242 0.1589 0.3696 2.1
28 5jcy:A 371 91 0.0284 0.0539 0.2198 2.3 5jcz:C, 4kp3:A, 4kp3:B, 6ku0:A, 6ku0:C, 4lx2:A
29 6m1y:A 938 33 0.0185 0.0139 0.3939 3.4 6m1y:B, 6m22:A, 6m22:B
30 6km9:B 845 33 0.0142 0.0118 0.3030 3.5 6km9:A, 6kma:A, 6kma:B, 6kma:C, 6kma:D
31 7tvb:A 558 45 0.0213 0.0269 0.3333 3.8 7tva:A, 7tva:B, 7ubt:A, 7uc6:A, 7uc7:A
32 8f5f:A 326 64 0.0284 0.0613 0.3125 4.2 4dzy:A, 4e00:A, 4e01:A, 4e02:A, 8egd:A, 8egf:A, 8egq:A, 8egu:A, 8f4q:A, 8f5f:B, 8f5j:A, 8f5s:A, 8f5s:B, 1gjv:A, 1gkz:A, 4h7q:A, 4h81:A, 4h85:A, 3tz0:A, 3tz2:A, 3tz4:A, 3tz5:A, 3vad:A
33 7air:A 885 33 0.0185 0.0147 0.3939 4.4 7aip:A, 7aip:B, 7aiq:A, 7aiq:B, 7air:B, 6kkr:A, 6kkr:B, 6kkt:A, 6kkt:B, 6kku:A, 6kku:B, 7tti:A, 7tti:B
34 6m23:A 936 33 0.0185 0.0139 0.3939 4.7 6m23:B
35 4zh7:A 485 75 0.0356 0.0515 0.3333 5.0
36 7d99:A 891 33 0.0185 0.0146 0.3939 5.1 7d99:B, 6ukn:A
37 6vef:A 844 33 0.0142 0.0118 0.3030 7.8 6vef:B
38 2jgd:A 812 33 0.0142 0.0123 0.3030 7.9 2jgd:B
39 7vgb:A 681 46 0.0242 0.0250 0.3696 7.9 7vgb:B, 7vgc:A
40 4hnv:B 1033 45 0.0228 0.0155 0.3556 8.0 8gk8:D
41 1l5j:A 862 97 0.0370 0.0302 0.2680 8.0 1l5j:B
42 3bg5:A 1137 45 0.0228 0.0141 0.3556 8.1 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C
43 3bg5:B 1074 45 0.0228 0.0149 0.3556 8.2 3bg5:D, 8gk8:C, 3hb9:B, 3hb9:D, 3hbl:B, 3hbl:D, 4hnt:B, 4hnt:D, 4hnu:B, 4hnu:D, 4hnv:D, 3ho8:A, 3ho8:C, 3ho8:B
44 3ubo:A 338 29 0.0213 0.0444 0.5172 8.5 3ubo:B
45 3ho8:D 934 45 0.0228 0.0171 0.3556 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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