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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SEIAVRIRGIYSTALTKLLMDRGFKIVQPSDVIAERFGIEKSYEDFDVDIYDKNHGVTIVGTKVEAVKKVFEEEFIDVFF
RKLPYKLHGIYKGLVVKRDDRFVYVDIGNVIGTVLIEELPDAAEGDEVVVQVKKHNVLPHLSTLITIPGDYAVLIPKPVQ
RHVKISRKIKDPEERERLRILGLSVDLGEWGVLWRTAAAYKDWNTLRDELVRLSKIADKLKEAEKFSAPAEIIEGREIYE
IEFGGGVKKKLDEIRNEVVPTIEGHHQFKSYDPEFTLAVDVAEGILAKLPSQRQKISKGFLEAIITSKGPKVGWIFTLNH
VKPDGQIIKIGPGEVIEVSTDPLKVTIKRYLRPGKFYDGLEVPIESGDYAITEIEAGKWWFVHRYYDKDGNLKGEFYNIN
TPVEIYPDKARYVDLEVDIVRWPDGKKEIIDKEKLKEHYEEGIISEKLYKATLRIAQEVYDRL

The query sequence (length=463) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8wo8:A 463 463 1.0000 1.0000 1.0000 0.0
2 5f6c:A 512 111 0.0864 0.0781 0.3604 0.004 8b0j:L, 2bx2:L, 2c4r:L, 5f6c:B, 6g63:A, 6g63:G, 6g63:L, 6g63:N, 2vmk:A, 2vmk:B, 2vrt:D, 2vrt:C
3 2c0b:L 488 95 0.0626 0.0594 0.3053 0.22 2vmk:C, 2vrt:A, 2vrt:B
4 7d8g:A 174 72 0.0367 0.0977 0.2361 0.36 7d8i:A, 7d8l:A, 7d8q:A
5 8k7x:A 673 180 0.0821 0.0565 0.2111 0.37 8k7y:A, 8k7y:E
6 8em4:A 3818 75 0.0497 0.0060 0.3067 0.40 8em4:B
7 8em7:A 4378 75 0.0497 0.0053 0.3067 0.40 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
8 1y9e:A 329 87 0.0583 0.0821 0.3103 1.2 1y9e:B, 1y9e:C, 1y9e:D, 1y9e:E, 1y9e:F
9 3gcz:A 259 71 0.0432 0.0772 0.2817 1.9
10 2okx:A 954 74 0.0410 0.0199 0.2568 2.3 2okx:B
11 3zo7:B 94 47 0.0346 0.1702 0.3404 5.1 3zo7:A, 3zo7:C, 3zo7:D, 3zo7:E, 3zo7:F, 3zo7:G, 3zo7:H, 3zo7:I, 3zo7:J
12 2ik0:B 286 77 0.0497 0.0804 0.2987 5.8 117e:A, 117e:B, 1e6a:A, 1e6a:B, 1e9g:A, 1e9g:B, 1huj:A, 1huj:B, 1huk:A, 1huk:B, 2ihp:A, 2ihp:B, 2ik0:A, 2ik1:A, 2ik1:B, 2ik2:A, 2ik2:B, 2ik4:A, 2ik4:B, 2ik6:A, 2ik6:B, 2ik7:A, 2ik7:B, 2ik9:A, 1m38:A, 1m38:B, 8prk:A, 8prk:B, 1wgi:A, 1wgi:B, 1wgj:A, 1wgj:B, 1ypp:A, 1ypp:B
13 2o1z:A 288 109 0.0540 0.0868 0.2294 6.0 2o1z:B, 2p1i:A, 2p1i:B, 2p1i:C, 2p1i:D, 2p1i:E, 2p1i:F, 2p1i:G, 2p1i:H
14 3lw7:B 170 32 0.0281 0.0765 0.4062 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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