Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SEESGLPKLPVPPLQQTLATYLQCMRHLVSEEQFRKSQAIVQQFGAPGGLGETLQQKLLERQEKTANWVSEYWLNDMYLN
NRLALPVNSSPAVIFARQHFPGTDDQLRFAASLISGVLSYKALLDSHSIPTDCAKGQPLCMKQYYGLFSSYRLPGHTQDT
LVAQNSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNAAARLPPIGLLTSDGRSEWAEARTVLV
KDSTNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIV
LVQCTEHLLKHMTQPELVRSPMVPLPAPRRLRWKCSPEIQGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKCSPD
AFIQVALQLAFYRLHRRLVPTYESASIRRFQEGRVDNIRSATPEALAFVRAVTDHKAAVPASEKLLLLKDAIRAQTAYTV
MAITGMAIDNHLLALRELARAMCAALPEMFMDETYLMSNRFVLSTSQVPTTTEMFCCYGPVVPNGYGACYNPQPETILFC
ISSFHSCAATSSSKFAKAVEESLIDMRDLCSLLPP

The query sequence (length=595) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2fy3:A 595 595 1.0000 1.0000 1.0000 0.0 7amd:A, 2fy4:A, 2fy5:A
2 2h3p:A 599 598 0.4471 0.4441 0.4448 0.0 2h3p:B, 2h3u:A, 2h3u:B, 2h3w:A, 2h3w:B, 1ndf:A, 1ndf:B, 1ndi:A, 1ndi:B, 1s5o:A, 1t7o:A, 1t7q:A, 1t7q:B
3 1xl8:B 600 600 0.3025 0.3000 0.3000 1.30e-78 1xl8:A
4 4eyw:B 634 632 0.3092 0.2902 0.2911 7.41e-74 2deb:A, 2deb:B, 4ep9:A, 4eph:A, 4eyw:A, 2fw3:A, 2rcu:A, 2rcu:B
5 6y0k:AAA 377 29 0.0252 0.0398 0.5172 3.3
6 1a73:A 162 56 0.0353 0.1296 0.3750 3.7 1a73:B, 1a74:A, 1a74:B, 1cyq:A, 1cyq:B, 1cz0:A, 1cz0:B, 1evw:A, 1evw:B, 1evw:C, 1evw:D, 1evx:A, 1evx:B, 1ipp:A, 1ipp:B, 2o6m:A, 2o6m:B, 8vmo:A, 8vmo:B, 8vmp:A, 8vmp:B, 8vmq:A, 8vmq:B, 8vmr:A, 8vmr:B, 8vms:A, 8vms:B, 8vmt:A, 8vmt:B, 8vmu:A, 8vmu:B, 8vmv:A, 8vmv:B, 8vmw:A, 8vmw:B, 8vmx:A, 8vmx:B, 8vmy:A, 8vmy:B, 8vmz:A, 8vmz:B, 8vn0:A, 8vn0:B, 8vn1:A, 8vn1:B, 8vn2:A, 8vn2:B, 8vn3:A, 8vn3:B, 8vn4:A, 8vn4:B, 8vn5:A, 8vn5:B, 8vn6:A, 8vn6:B, 8vn7:A, 8vn7:B, 8vn8:A, 8vn8:B, 8vn9:A, 8vn9:B, 8vna:A, 8vna:B, 8vnb:A, 8vnb:B, 8vnc:A, 8vnc:B, 8vnd:A, 8vnd:B, 8vne:A, 8vne:B, 8vnf:A, 8vnf:B, 8vng:A, 8vng:B, 8vnh:A, 8vnh:B, 8vnj:A, 8vnj:B, 8vnk:A, 8vnk:B, 8vnl:A, 8vnl:B, 8vnm:A, 8vnm:B, 8vnn:A, 8vnn:B, 8vno:A, 8vno:B, 8vnp:A, 8vnp:B, 8vnq:A, 8vnq:B, 8vnr:A, 8vnr:B, 8vns:A, 8vns:B, 8vnt:A, 8vnt:B, 8vnu:A, 8vnu:B
7 4rer:A 459 87 0.0303 0.0392 0.2069 6.8
8 7vru:A 497 53 0.0252 0.0302 0.2830 7.0 7vs4:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218