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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SEEIESLEQFHMATASSLIHKQMCSIVYTGPLKVQQMKNFIDSLVASLSAAVSNLVKILKDKFGVLDVASKRWLVKPSAK
NHAWGVVETHARKYHVALLEHDEFGIITCDNWRRVAVSSESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGK
TKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFL
VEMSLCDIAYVYGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTSSEKKSVSQEM
VSGAASINPVSKPLKGKILTFTQSDKEALLSRGYADVHTVHEVQGETYADVSLVRLTPTPVSIIARDSPHVLVSLSRHTK
SLKYYTVVMDPLVSIIRDLERVSSYLLDMYKVDA

The query sequence (length=434) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3wrx:C 434 434 1.0000 1.0000 1.0000 0.0 3wrx:D, 3wry:C, 3wry:D
2 7y38:Y 466 283 0.1613 0.1502 0.2473 3.77e-06 6jim:A, 6jim:B
3 6msg:C 396 196 0.1152 0.1263 0.2551 0.65 8cvt:C, 5gjq:J, 5gjr:J, 5gjr:x, 5l4g:J, 6msb:C, 6msd:C, 6msh:C, 6msj:C, 6msk:C, 7qxn:C, 7qxp:C, 7qxu:C, 7qxx:C, 7qy7:C, 7qyb:C, 5t0c:AC, 5t0c:BC, 5t0g:C, 5t0h:C, 5vfq:C, 5vfs:C, 7w37:C, 7w38:C, 7w39:C, 7w3a:C, 7w3b:C, 7w3c:C, 7w3f:C, 7w3g:C, 7w3h:C, 7w3i:C, 7w3j:C, 7w3m:C, 6wjd:C
4 5n8o:A 1432 59 0.0415 0.0126 0.3051 0.67 4l0j:A, 1p4d:A, 1p4d:B, 1p4d:C, 2q7t:A, 2q7t:B, 2q7u:A
5 5fkv:A 1145 100 0.0691 0.0262 0.3000 0.95 5fkw:A, 4jom:A, 5m1s:A
6 6ura:A 441 98 0.0668 0.0658 0.2959 2.0 6ura:B, 6ura:C, 6ura:D
7 7qt1:C 452 88 0.0599 0.0575 0.2955 2.0 7qsv:A, 7qsv:B, 7qsv:C, 7qsv:D, 7qsv:E, 7qsv:F, 7qsv:G, 7qsv:H, 7qsx:A, 7qsx:F, 7qsx:B, 7qsx:E, 7qsx:C, 7qsx:D, 7qsx:G, 7qsx:H, 7qsy:A, 7qsy:C, 7qsy:E, 7qsy:G, 7qsz:A, 7qsz:B, 7qsz:C, 7qsz:D, 7qt1:A, 7qt1:E, 7qt1:G, 7qvi:A, 7qvi:B, 7qvi:C, 7qvi:D, 7qvi:E, 7qvi:F, 7qvi:G, 7qvi:H, 7qvi:I, 7qvi:J, 7qvi:K, 7qvi:L, 7qvi:M, 7qvi:N, 7qvi:O, 7qvi:P
8 8phw:A 454 92 0.0599 0.0573 0.2826 2.4
9 4ej0:A 330 49 0.0369 0.0485 0.3265 5.1 4ej0:B, 4ej0:C, 4ej0:D, 4ej0:E, 4ej0:F, 4ej0:G, 4ej0:H, 4ej0:I, 4ej0:J
10 8scd:A 264 21 0.0207 0.0341 0.4286 5.3 7s2m:A, 7s2m:B, 7s2m:C
11 7sno:A 506 77 0.0507 0.0435 0.2857 5.8
12 7upt:F 236 40 0.0415 0.0763 0.4500 6.8
13 5lkm:B 346 62 0.0438 0.0549 0.3065 6.8
14 5ifw:B 702 49 0.0392 0.0242 0.3469 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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